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(-) Description

Title :  THE X-RAY CRYSTAL STRUCTURE OF POLY(ADP-RIBOSE) GLYCOHYDROLASE BOUND TO THE INHIBITOR ADP-HPD FROM THERMOMONOSPORA CURVATA
 
Authors :  M. S. Dunstan, D. Leys
Date :  18 Jun 11  (Deposition) - 24 Aug 11  (Release) - 12 Oct 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.48
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Slade, M. S. Dunstan, E. Barkauskaite, R. Weston, P. Lafite, N. Dixon, M. Ahel, D. Leys, I. Ahel
The Structure And Catalytic Mechanism Of A Poly(Adp-Ribose) Glycohydrolase.
Nature V. 477 616 2011
PubMed-ID: 21892188  |  Reference-DOI: 10.1038/NATURE10404

(-) Compounds

Molecule 1 - POLY(ADP-RIBOSE) GLYCOHYDROLASE
    Chains: A
    EC Number: 3.2.1.143
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TCUR_1721
    Organism Scientific: THERMOMONOSPORA CURVATA
    Organism Taxid: 471852
    Strain: ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081
    Synonym: PARG

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1A1R1Ligand/Ion5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:75 , THR A:76 , PHE A:96 , SER A:98 , GLY A:104 , ALA A:112 , GLN A:113 , GLU A:114 , GLU A:115 , ALA A:221 , GLY A:223 , CYS A:224 , GLY A:225 , VAL A:226 , PHE A:227 , ALA A:258 , TRP A:260 , ASP A:261 , ARG A:268 , HOH A:303 , HOH A:339 , HOH A:344 , HOH A:357 , HOH A:382 , HOH A:429 , HOH A:513 , HOH A:529BINDING SITE FOR RESIDUE A1R A 1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3SII)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3SII)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3SII)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3SII)

(-) Exons   (0, 0)

(no "Exon" information available for 3SII)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:265
 aligned with D1AC29_THECD | D1AC29 from UniProtKB/TrEMBL  Length:316

    Alignment length:274
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309    
         D1AC29_THECD    40 RHSRRAIAAETVEILERGRYTAPSGRVVPIADHVAQAVRGTRLYRPEKLAVLLEGLGAASDGAPTRIEVTEETTLAAARRLTGAAGDQVACLNFASAEHPGGGFLSGAHAQEEGLARSSGLYASLRAVPQFYAFHHRQRDPLYSDHLIYSPGVPVFRDDAGRLLEEPYRVAFLTSPAPNRRAIGDLRTVEEIGRVLRGRAAKVLAAARHHGHRRLVLGAWGCGVFGNDPAQVAETFAGLLLDGGPFAGRFAHVVFAVWDTAPGAPRHAAFARRF 313
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhheee.....eeehhhhhhhhhhh.eeehhhhhhhhhhh---------.eeeee..hhhhhhhhhhhhh....eeeee........hhhhh..hhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.......eeeeeeeeeee.....eeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhh..........eeeee.......hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sii A   3 RHSRRAIAAETVEILERGRYTAPSGRVVPIADHVAQAVRGTRLYRPEKLAVLLEG---------TRIEVTEETTLAAARRLTGAAGDQVACLNFASAEHPGGGFLSGAHAQEEGLARSSGLYASLRAVPQFYAFHHRQRDPLYSDHLIYSPGVPVFRDDAGRLLEEPYRVAFLTSPAPNRRAIGDLRTVEEIGRVLRGRAAKVLAAARHHGHRRLVLGAWGCGVFGNDPAQVAETFAGLLLDGGPFAGRFAHVVFAVWDTAPGAPRHAAFARRF 276
                                    12        22        32        42        52    |    -    |   72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272    
                                                                                 57        67
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3SII)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3SII)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3SII)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        D1AC29_THECD | D1AC29: 3sig 3sih 3sij

(-) Related Entries Specified in the PDB File

3sig THE X-RAY CRYSTAL STRUCTURE OF POLY(ADP-RIBOSE) GLYCOHYDROLASE (PARG) BOUND TO ADP-RIBOSE FROM THERMOMONOSPORA CURVATA
3sih THE X-RAY CRYSTAL STRUCTURE OF POLY(ADP-RIBOSE) GLYCOHYDROLASE (PARG) FROM THERMOMONOSPORA CURVATA
3sij THE X-RAY CRYSTAL STRUCTURE OF POLY(ADP-RIBOSE) GLYCOHYDROLASE E115A MUTANT FROM THERMOMONOSPORA CURVATA