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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE HYDROLASE (BT_2193) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.25 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  14 Jun 11  (Deposition) - 29 Jun 11  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.25
Chains :  Asym./Biol. Unit :  A
Keywords :  7-Stranded Beta/Alpha Barrel, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Hydrolase (Bt_2193) Fro Bacteroides Thetaiotaomicron Vpi-5482 At 1. 25 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL HYDROLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: SEQUENCE DATABASE RESIDUES 23-557
    Gene: BT_2193
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON
    Organism Taxid: 818
    Synonym: PEPTIDASE S26A, SIGNAL PEPTIDASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric/Biological Unit (2, 16)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL
2MSE11Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:272 , ASP A:331 , ASP A:333 , TYR A:394 , LEU A:427 , HOH A:565 , HOH A:605 , HOH A:701 , HOH A:989 , HOH A:1055BINDING SITE FOR RESIDUE GOL A 558
2AC2SOFTWARETRP A:480 , GLU A:481 , GLY A:482 , TRP A:520 , HOH A:832 , HOH A:995 , HOH A:1017BINDING SITE FOR RESIDUE GOL A 559
3AC3SOFTWARELYS A:119 , ASP A:303 , THR A:305 , ARG A:373BINDING SITE FOR RESIDUE GOL A 560
4AC4SOFTWARESER A:398 , MSE A:400 , ASP A:402 , LYS A:436 , HOH A:634 , HOH A:721BINDING SITE FOR RESIDUE GOL A 561
5AC5SOFTWAREGLU A:66 , PRO A:445 , LYS A:470 , HOH A:650 , HOH A:660 , HOH A:747 , HOH A:1093BINDING SITE FOR RESIDUE GOL A 562

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3SGG)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro A:389 -Ser A:390

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3SGG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3SGG)

(-) Exons   (0, 0)

(no "Exon" information available for 3SGG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:512
 aligned with Q8A5P5_BACTN | Q8A5P5 from UniProtKB/TrEMBL  Length:557

    Alignment length:512
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555  
         Q8A5P5_BACTN    46 DGLIDPAEPLDRGFMHLKGRELKSLNSISITGLNDGEKVILSTLAGLAARVTGDQVYINEGGPSSVWLKQMQNKYGIPVNTYNALAPLVQHYVETGVIKGYIVYTPYSEGQSHSINVATSLCGLLRGIAVPESLVDKVKAMGVTTELMDVRSYDEKWLYENYKDQLDKSLAADMKPEIFHHLRDYITMTNAFAFYDYNARRDWSWRTSILKDLDKGAYCFGYYDLDEWGMVNNASQLGVSMLPTDQAANLATLSSIYDTTGLKQRPATKEVVTEENVHYVTFLVSDGDNIAFNLWGQQGYMDHDLHGQFPLGYTISPSLYDLAPAALRWYYENSKEGDYFVAGPSGSSYIFPSKMSDADLDDYLAKLNEYVDKSGLNICNILDQKIMDNPKVYNKYLAQPNIDAIFYTGYGEKGDGRIKFSDNGKPVIEQRSVLWEGIDGGSNRGEESTVISQINSRSANPHSADGYTFVFVHCWTKNQQSIKTVIDGLNDNVRVVPVDQFVQLVKQNLGPK 557
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------GxGYxYP-3sggA01 A:85-552                                                                                                                                                                                                                                                                                                                                                                                                                                                            ----- Pfam domains
         Sec.struct. author ..........ee....ee.....eeeeee....hhhhhhhhhhhhhhhhhhh.eeeeee..hhhhhhhhhhhhhhh..eeee.hhhhhhhhhhhh....eeeee........hhhhhhhhhhhhhheeeee..hhhhhhhh....eeee....hhhhhhhhhhhhh...eeee........hhhhhhhhh.eee........hhhhhhhhhh.....eeee....hhhhhhhhhhhh..eeee.....hhhhhh.......................eeeeeee....hhhhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhhhhh...eeeee........hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eeeeee........eee.....eeee..eee..hhhhhh...hhhhhhhhhhhh.....hhh.eeeeee.....hhhhhhhhhhh....eee.hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sgg A  46 DGLIDPAEPLDRGFmHLKGRELKSLNSISITGLNDGEKVILSTLAGLAARVTGDQVYINEGGPSSVWLKQmQNKYGIPVNTYNALAPLVQHYVETGVIKGYIVYTPYSEGQSHSINVATSLCGLLRGIAVPESLVDKVKAmGVTTELmDVRSYDEKWLYENYKDQLDKSLAADmKPEIFHHLRDYITmTNAFAFYDYNARRDWSWRTSILKDLDKGAYCFGYYDLDEWGmVNNASQLGVSmLPTDQAANLATLSSIYDTTGLKQRPATKEVVTEENVHYVTFLVSDGDNIAFNLWGQQGYmDHDLHGQFPLGYTISPSLYDLAPAALRWYYENSKEGDYFVAGPSGSSYIFPSKmSDADLDDYLAKLNEYVDKSGLNICNILDQKImDNPKVYNKYLAQPNIDAIFYTGYGEKGDGRIKFSDNGKPVIEQRSVLWEGIDGGSNRGEESTVISQINSRSANPHSADGYTFVFVHCWTKNQQSIKTVIDGLNDNVRVVPVDQFVQLVKQNLGPK 557
                                    55    |   65        75        85        95       105       115|      125       135       145       155       165       175       185|      195       205       215   |   225       235       245       255       265       275       285|      295       305       315       325       335       345|      355       365       375       385       395    |  405       415       425      |435       445       455       465       475       485       495       505       515       525       535       545       555  
                                         60-MSE                                                 116-MSE                                                               186-MSE  |                       219-MSE       233-MSE                                   275-MSE    286-MSE                                                     346-MSE                                               400-MSE                         432-MSE                                                                                                                         
                                                                                                                                                                             193-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3SGG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3SGG)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: GxGYxYP] (1)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3SGG)

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  Cis Peptide Bonds
    Pro A:389 - Ser A:390   [ RasMol ]  
 

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