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(-) Description

Title :  CRYSTAL STRUCTURE OF VOPL C TERMINAL DOMAIN
 
Authors :  B. Yu, M. K. Rosen, D. R. Tomchick
Date :  10 Jun 11  (Deposition) - 31 Aug 11  (Release) - 23 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.31
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Alpha Helix, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Yu, H. C. Cheng, C. A. Brautigam, D. R. Tomchick, M. K. Rosen
Mechanism Of Actin Filament Nucleation By The Bacterial Effector Vopl.
Nat. Struct. Mol. Biol. V. 18 1068 2011
PubMed-ID: 21873984  |  Reference-DOI: 10.1038/NSMB.2110

(-) Compounds

Molecule 1 - VOPL C TERMINAL DOMAIN PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX2T
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 247-484
    Gene: VOPL, VPA1370
    Organism Scientific: VIBRIO PARAHAEMOLYTICUS
    Organism Taxid: 670

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 9)

Asymmetric/Biological Unit (1, 9)
No.NameCountTypeFull Name
1CL9Ligand/IonCHLORIDE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA B:183BINDING SITE FOR RESIDUE CL B 242
2AC2SOFTWAREGLU A:145BINDING SITE FOR RESIDUE CL B 243
3AC3SOFTWAREALA B:173BINDING SITE FOR RESIDUE CL B 244
4AC4SOFTWAREASP A:38 , GLU A:165BINDING SITE FOR RESIDUE CL B 245
5AC5SOFTWAREASN B:224BINDING SITE FOR RESIDUE CL B 246
6AC6SOFTWARELYS B:74 , THR B:116BINDING SITE FOR RESIDUE CL B 247
7AC7SOFTWAREASP B:170BINDING SITE FOR RESIDUE CL B 248

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3SEO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3SEO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3SEO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3SEO)

(-) Exons   (0, 0)

(no "Exon" information available for 3SEO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:218
 aligned with Q87GE5_VIBPA | Q87GE5 from UniProtKB/TrEMBL  Length:484

    Alignment length:239
                                   254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474         
         Q87GE5_VIBPA   245 HERLLSEDLFKQSPKLSEQELDELANNLADYLFQAADIDWHQVISEKTRGLTTEEMAKSEHRYVQAFCREILKYPDCYKSADVASPESPKSGGGSVIDVALKRLQTGRERLFTTTDEKGNRELKKGDAILESAINAARMAISTEEKNTILSNNVKSATFEVFCELPCMDGFAEQNGKTAFYALRAGFYSAFKNTDTAKQDITKFMKDNLQAGFSGYSYQGLTNRVAQLEAQLAALSAKL 483
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.---hhhhhhh..hhhhhhhhhhhh....------------------hhhhhhhhhhh.....ee...........eehhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3seo A   2 HMRLLSEDLFKQSPKLSEQELDELANNLADYLFQAADIDWHQVISEKT---TTEEMAKSEHRYVQAFCREILKYPD------------------SVIDVALKRLQTGRERLFTTTDEKGNRELKKGDAILESAINAARMAISTEEKNTILSNNVKSATFEVFCELPCMDGFAEQNGKTAFYALRAGFYSAFKNTDTAKQDITKFMKDNLQAGFSGYSYQGLTNRVAQLEAQLAALSAKL 240
                                    11        21        31        41       | - |      61        71     |   -         -    |  101       111       121       131       141       151       161       171       181       191       201       211       221       231         
                                                                          49  53                      77                 96                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:226
 aligned with Q87GE5_VIBPA | Q87GE5 from UniProtKB/TrEMBL  Length:484

    Alignment length:240
                                   253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483
         Q87GE5_VIBPA   244 THERLLSEDLFKQSPKLSEQELDELANNLADYLFQAADIDWHQVISEKTRGLTTEEMAKSEHRYVQAFCREILKYPDCYKSADVASPESPKSGGGSVIDVALKRLQTGRERLFTTTDEKGNRELKKGDAILESAINAARMAISTEEKNTILSNNVKSATFEVFCELPCMDGFAEQNGKTAFYALRAGFYSAFKNTDTAKQDITKFMKDNLQAGFSGYSYQGLTNRVAQLEAQLAALSAKL 483
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh..hhhhhhh..hhhhhhhhhhhhhhhhhh..--------------hhhhhhhhhhhhh...eeeee.....eeeeehhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3seo B   1 GHMRLLSEDLFKQSPKLSEQELDELANNLADYLFQAADIDWHQVISEKTRGLTTEEMAKSEHRYVQAFCREILKYPDCYKS--------------SVIDVALKRLQTGRERLFTTTDEKGNRELKKGDAILESAINAARMAISTEEKNTILSNNVKSATFEVFCELPCMDGFAEQNGKTAFYALRAGFYSAFKNTDTAKQDITKFMKDNLQAGFSGYSYQGLTNRVAQLEAQLAALSAKL 240
                                    10        20        30        40        50        60        70        80|        -     | 100       110       120       130       140       150       160       170       180       190       200       210       220       230       240
                                                                                                           81             96
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3SEO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3SEO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3SEO)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q87GE5_VIBPA | Q87GE5)
molecular function
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q87GE5_VIBPA | Q87GE5: 3m1f 3ryl

(-) Related Entries Specified in the PDB File

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