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(-) Description

Title :  HYDROGENASE EXPRESSION PROTEIN HUPH FROM THIOBACILLUS DENITRIFICANS ATCC 25259
 
Authors :  E. V. Filippova, G. Minasov, L. Shuvalova, O. Kiryukhina, J. Ruan, R. D. A. Joachimiak, W. F. Anderson, Midwest Center For Structural Gen (Mcsg)
Date :  03 Jun 11  (Deposition) - 06 Jul 11  (Release) - 06 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.67
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Huph, Hydrogenase Expression Protein, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. V. Filippova, G. Minasov, L. Shuvalova, O. Kiryukhina, J. Ruan, R. D. Leo, A. Joachimiak, W. F. Anderson, Midwest Center For Structural Genomics (Mcsg)
Hydrogenase Expression Protein Huph From Thiobacillus Denitrificans Atcc 25259
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYDROGENASE EXPRESSION PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 (DE3) MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TBD_1379
    Organism Scientific: THIOBACILLUS DENITRIFICANS
    Organism Taxid: 292415
    Strain: ATCC 25259

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2PGE1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:18 , GLY A:20 , ASN A:21 , ALA A:22 , LEU A:23 , ASP A:56 , TRP A:59BINDING SITE FOR RESIDUE GOL A 137
2AC2SOFTWAREASP A:121 , ALA A:128 , ALA B:85 , HOH B:196BINDING SITE FOR RESIDUE PGE A 138

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3SB1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3SB1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3SB1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3SB1)

(-) Exons   (0, 0)

(no "Exon" information available for 3SB1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:119
 aligned with Q3SJ38_THIDA | Q3SJ38 from UniProtKB/TrEMBL  Length:136

    Alignment length:120
                                    26        36        46        56        66        76        86        96       106       116       126       136
         Q3SJ38_THIDA    17 ARSGNALPLLREIAEHLHHLLETGEASTIDLSALPLTPGDLEWLRAELGGGEVSVTLHADGASTLDETAFPGVWWIIHRNAQGAVTTQFIEVAFVPELVKSPRADVAAARAALVLRMADL 136
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhh..eeehhhhh..hhhhhhhhhhhhh...eeeee.-..eeeeee.....eeeeeee.....eeeeeeee...hhhhh.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3sb1 A  17 ARSGNALPLLREIAEHLHHLLETGEASTIDLSALPLTPGDLEWLRAELGGGEVSVTLH-DGASTLDETAFPGVWWIIHRNAQGAVTTQFIEVAFVPELVKSPRADVAAARAALVLRMADL 136
                                    26        36        46        56        66       |76        86        96       106       116       126       136
                                                                                    74 |                                                            
                                                                                      76                                                            


Chain B from PDB  Type:PROTEIN  Length:119
 aligned with Q3SJ38_THIDA | Q3SJ38 from UniProtKB/TrEMBL  Length:136

    Alignment length:120
                                    26        36        46        56        66        76        86        96       106       116       126       136
         Q3SJ38_THIDA    17 ARSGNALPLLREIAEHLHHLLETGEASTIDLSALPLTPGDLEWLRAELGGGEVSVTLHADGASTLDETAFPGVWWIIHRNAQGAVTTQFIEVAFVPELVKSPRADVAAARAALVLRMADL 136
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) --HupH_C-3sb1B01 B:19-135                                                                                              - Pfam domains (1)
           Pfam domains (2) --HupH_C-3sb1B02 B:19-135                                                                                              - Pfam domains (2)
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhh..eeee.hhh..hhhhhhhhhhhhh...eeeee..-.eeeeee.....eeeeeee.....eeeeeeee...hhhhh.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3sb1 B  17 ARSGNALPLLREIAEHLHHLLETGEASTIDLSALPLTPGDLEWLRAELGGGEVSVTLHA-GASTLDETAFPGVWWIIHRNAQGAVTTQFIEVAFVPELVKSPRADVAAARAALVLRMADL 136
                                    26        36        46        56        66        |-|       86        96       106       116       126       136
                                                                                     75 |                                                           
                                                                                       77
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3SB1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3SB1)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: HupH_C] (1)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3SB1)

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