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(-) Description

Title :  CRYSTAL STRUCTURE OF A MEMBER OF DUF4221 FAMILY (BVU_1028) FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.75 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  01 Jun 11  (Deposition) - 22 Jun 11  (Release) - 23 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  6-Bladed Beta-Propeller, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Member Of Duf4221 Family (Bvu_1028) From Bacteroides Vulgatus Atcc 8482 At 1. 75 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MEMBER OF DUF4221 FAMILY
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: SEQUENCE DATABASE RESIDUES 27-394
    Gene: BVU_1028
    Organism Scientific: BACTEROIDES VULGATUS
    Organism Taxid: 435590
    Strain: ATCC 8482 / DSM 1447 / NCTC 11154

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 28)

Asymmetric/Biological Unit (4, 28)
No.NameCountTypeFull Name
1FMT13Ligand/IonFORMIC ACID
2GOL3Ligand/IonGLYCEROL
3MSE9Mod. Amino AcidSELENOMETHIONINE
4NA3Ligand/IonSODIUM ION

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHOH A:476 , HOH A:477 , HOH A:557 , HOH A:875 , HOH A:878 , HOH A:879BINDING SITE FOR RESIDUE NA A 400
02AC2SOFTWAREASP A:46 , THR A:49 , ASN A:378 , HOH A:453 , HOH A:524BINDING SITE FOR RESIDUE NA A 401
03AC3SOFTWARETYR A:77 , LEU A:95 , HOH A:433 , HOH A:464 , HOH A:484 , HOH A:586BINDING SITE FOR RESIDUE NA A 402
04AC4SOFTWAREASP A:185 , ARG A:188BINDING SITE FOR RESIDUE FMT A 403
05AC5SOFTWAREGLY A:222 , GLY A:223 , TYR A:224 , GLY A:225 , PHE A:242 , GOL A:416 , HOH A:473 , HOH A:823BINDING SITE FOR RESIDUE FMT A 404
06AC6SOFTWARELYS A:272 , ASN A:289 , PRO A:290 , HOH A:545 , HOH A:581 , HOH A:656BINDING SITE FOR RESIDUE FMT A 405
07AC7SOFTWAREILE A:165 , LYS A:166 , TYR A:230 , TYR A:232 , SER A:235 , HOH A:829BINDING SITE FOR RESIDUE FMT A 406
08AC8SOFTWAREASN A:132 , HOH A:657 , HOH A:790BINDING SITE FOR RESIDUE FMT A 407
09AC9SOFTWAREARG A:110 , SER A:112 , ILE A:165 , TYR A:232 , HOH A:580 , HOH A:614BINDING SITE FOR RESIDUE FMT A 408
10BC1SOFTWARETYR A:51 , ASN A:317 , LYS A:325 , ASN A:368 , ASN A:369 , LEU A:370 , HOH A:766BINDING SITE FOR RESIDUE FMT A 409
11BC2SOFTWARETHR A:145 , PRO A:146 , GLU A:147 , ARG A:149BINDING SITE FOR RESIDUE FMT A 410
12BC3SOFTWARETYR A:159 , PHE A:242 , GOL A:416 , HOH A:489 , HOH A:566BINDING SITE FOR RESIDUE FMT A 411
13BC4SOFTWARETHR A:98 , LYS A:262 , ARG A:264 , LEU A:266BINDING SITE FOR RESIDUE FMT A 412
14BC5SOFTWAREASN A:123 , ASN A:124 , PHE A:150 , LYS A:285BINDING SITE FOR RESIDUE FMT A 413
15BC6SOFTWAREPRO A:104 , ALA A:105 , ASN A:124 , ASN A:289 , HOH A:542 , HOH A:747BINDING SITE FOR RESIDUE FMT A 414
16BC7SOFTWARETYR A:321 , GLU A:322 , HOH A:629 , HOH A:750 , HOH A:858BINDING SITE FOR RESIDUE FMT A 415
17BC8SOFTWAREARG A:173 , GLU A:175 , GLY A:222 , GLY A:223 , TYR A:224 , GLY A:225 , FMT A:404 , FMT A:411 , HOH A:633 , HOH A:808BINDING SITE FOR RESIDUE GOL A 416
18BC9SOFTWARETHR A:323 , PRO A:324 , LYS A:325 , TYR A:351 , PHE A:352 , TYR A:353 , LYS A:354 , ASN A:369 , HOH A:442BINDING SITE FOR RESIDUE GOL A 417
19CC1SOFTWAREPHE A:59 , GLU A:61 , TYR A:66 , ILE A:81 , LYS A:91 , SER A:115 , PRO A:146 , GLU A:147 , HOH A:648 , HOH A:782BINDING SITE FOR RESIDUE GOL A 418

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3S9J)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:112 -Pro A:113

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3S9J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3S9J)

(-) Exons   (0, 0)

(no "Exon" information available for 3S9J)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:362
 aligned with A6KZ57_BACV8 | A6KZ57 from UniProtKB/TrEMBL  Length:394

    Alignment length:362
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388  
         A6KZ57_BACV8    29 KQNEVELVAEKQLAFPLDEQTYYLSKSMFQFEENGKEYLHFENTQKSLYDIVIFDIENQQIAKRIPLHKTGPNGLPAVFGSRPSPDSQYILVAQNNISRLSSINSQGEIIRNYNFQTPEGRFTPLSFGSYYNAPAFIKDSCIFLRQEILKPDMKKEDWPRTHMFASQDLRTGEVKWIPIFYPPIFKEEYDNIAGGYGFSYDYNYKESRLVCGFFGYDSLMVTDDLKHIRWYNAKSRYLKSMKPKLGNSMEGINAIIKLNENPRYWHIMYDKYRNVYYRFAEMPYKLAPNESPYETPKGKEFSVIVLNADFEIIGETKFPGKKYFYKMSFVGREGLYISENNLENPQFDENKLVFTCFKIKNA 390
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains DUF4221-3s9jA01 A:29-345                                                                                                                                                                                                                                                                                                     --------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeee...........eeeeee..eeeeeeee......eeeeee....eeeeeee..............eee......eeeeehhh.eeeee.....eeeeee.....................eee..eeeee........hhhhhhh.eeeeeee.....eeeeeee...........eee...eeeeee....eeeeee....eeeee.....eeeee.............ee...hhhhhhhhhhh.eeeeeeee....eeeeeee...................eeeeee.....eeeeeee.....eeeeeeee..eeeee............eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s9j A  29 KQNEVELVAEKQLAFPLDEQTYYLSKSmFQFEENGKEYLHFENTQKSLYDIVIFDIENQQIAKRIPLHKTGPNGLPAVFGSRPSPDSQYILVAQNNISRLSSINSQGEIIRNYNFQTPEGRFTPLSFGSYYNAPAFIKDSCIFLRQEILKPDmKKEDWPRTHmFASQDLRTGEVKWIPIFYPPIFKEEYDNIAGGYGFSYDYNYKESRLVCGFFGYDSLmVTDDLKHIRWYNAKSRYLKSmKPKLGNSmEGINAIIKLNENPRYWHImYDKYRNVYYRFAEmPYKLAPNESPYETPKGKEFSVIVLNADFEIIGETKFPGKKYFYKmSFVGREGLYISENNLENPQFDENKLVFTCFKIKNA 390
                                    38        48       |58        68        78        88        98       108       118       128       138       148       158       168       178  |    188  |    198       208       218       228       238       248       258       268|      278       288       298       308 |     318       328       338       348      |358       368       378       388  
                                                      56-MSE                                                                                                                      181-MSE   191-MSE                                                  248-MSE              269-MSE 277-MSE            296-MSE       310-MSE                                      355-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3S9J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3S9J)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: DUF4221] (1)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3S9J)

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