3S1J - JenaLib

Title :   CRYSTAL STRUCTURE OF ACETATE-BOUND HELL'S GATE GLOBIN I

Authors :   A. H. Teh, J. A. Saito, A. Baharuddin, J. R. Tuckerman, J. S. Newhouse, M. E. I. Newhouse, R. A. Rahim, F. Favier, C. Didierjean, E. H. S. Sousa, M. P. F. Dunfield, G. Gonzalez, M. A. Gilles-Gonzalez, N. Najimudin, M. A

Date :   15 May 11 (Deposition) - 21 Sep 11 (Release) - 13 Mar 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C  (2x)

Keywords :   Globin, Heme, Acetate-Bound, Autoxidation, Oxygen Transport, Oxygen Storage (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. H. Teh, J. A. Saito, A. Baharuddin, J. R. Tuckerman, J. S. Newhouse, M. Kanbe, E. I. Newhouse, R. A. Rahim, F. Favier, C. Didierjean, E. H. S. Sousa, M. B. Stott, P. F. Dunfield, G. Gonzalez, M. A. Gilles-Gonzalez, N. Najimudin, M. Alam
Hell'S Gate Globin I: An Acid And Thermostable Bacterial Hemoglobin Resembling Mammalian Neuroglobin
Febs Lett. V. 585 3250 2011
PubMed-ID: 21925500 | Reference-DOI: 10.1016/J.FEBSLET.2011.09.002

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 9)

Sites (9, 9)

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:16 , LEU A:42 , PHE A:43 , GLN A:44 , ASN A:45 , GLN A:50 , LYS A:53 , VAL A:57 , LEU A:78 , ARG A:81 , HIS A:82 , TYR A:85 , VAL A:87 , HIS A:91 , TYR A:92 , VAL A:95 , TYR A:123 , ACT A:141 , HOH A:164 , HOH A:171	BINDING SITE FOR RESIDUE HEM A 140
2	AC2	SOFTWARE	TYR A:29 , GLN A:50 , HEM A:140	BINDING SITE FOR RESIDUE ACT A 141
3	AC3	SOFTWARE	LEU B:42 , PHE B:43 , GLN B:44 , ASN B:45 , GLN B:50 , LYS B:53 , VAL B:57 , LEU B:78 , ARG B:81 , HIS B:82 , TYR B:85 , VAL B:87 , HIS B:91 , VAL B:95 , TYR B:123 , ACT B:141	BINDING SITE FOR RESIDUE HEM B 140
4	AC4	SOFTWARE	TYR B:29 , PHE B:43 , GLN B:50 , HEM B:140	BINDING SITE FOR RESIDUE ACT B 141
5	AC5	SOFTWARE	ASP B:89 , TYR B:92 , THR B:131 , HOH B:199	BINDING SITE FOR RESIDUE SO4 B 142
6	AC6	SOFTWARE	GLY B:108 , GLN B:109	BINDING SITE FOR RESIDUE SO4 B 143
7	AC7	SOFTWARE	LEU C:42 , PHE C:43 , GLN C:44 , ASN C:45 , GLN C:50 , LYS C:53 , VAL C:57 , LEU C:78 , ARG C:81 , HIS C:82 , TYR C:85 , VAL C:87 , HIS C:91 , VAL C:95 , TYR C:123 , ACT C:141 , HOH C:199	BINDING SITE FOR RESIDUE HEM C 140
8	AC8	SOFTWARE	TYR C:29 , PHE C:43 , GLN C:50 , HEM C:140	BINDING SITE FOR RESIDUE ACT C 141
9	AC9	SOFTWARE	ARG B:16 , VAL C:87 , VAL C:88 , ASP C:89 , HOH C:230	BINDING SITE FOR RESIDUE SO4 C 142

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:131
 aligned with B3DUZ7_METI4 | B3DUZ7 from UniProtKB/TrEMBL  Length:133

    Alignment length:131
                                    11        21        31        41        51        61        71        81        91       101       111       121       131 
         B3DUZ7_METI4     2 IDQKEKELIKESWKRIEPNKNEIGLLFYANLFKEEPTVSVLFQNPISSQSRKLMQVLGILVQGIDNLEGLIPTLQDLGRRHKQYGVVDSHYPLVGDCLLKSIQEYLGQGFTEEAKAAWTKVYGIAAQVMTA 132
               SCOP domains d3s1ja_ A: automated matches                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s1j A   2 IDQKEKELIKESWKRIEPNKNEIGLLFYANLFKEEPTVSVLFQNPISSQSRKLMQVLGILVQGIDNLEGLIPTLQDLGRRHKQYGVVDSHYPLVGDCLLKSIQEYLGQGFTEEAKAAWTKVYGIAAQVMTA 132
                                    11        21        31        41        51        61        71        81        91       101       111       121       131

Chain B from PDB  Type:PROTEIN  Length:131
 aligned with B3DUZ7_METI4 | B3DUZ7 from UniProtKB/TrEMBL  Length:133

    Alignment length:131
                                    11        21        31        41        51        61        71        81        91       101       111       121       131 
         B3DUZ7_METI4     2 IDQKEKELIKESWKRIEPNKNEIGLLFYANLFKEEPTVSVLFQNPISSQSRKLMQVLGILVQGIDNLEGLIPTLQDLGRRHKQYGVVDSHYPLVGDCLLKSIQEYLGQGFTEEAKAAWTKVYGIAAQVMTA 132
               SCOP domains d3s1jb_ B: automated matches                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s1j B   2 IDQKEKELIKESWKRIEPNKNEIGLLFYANLFKEEPTVSVLFQNPISSQSRKLMQVLGILVQGIDNLEGLIPTLQDLGRRHKQYGVVDSHYPLVGDCLLKSIQEYLGQGFTEEAKAAWTKVYGIAAQVMTA 132
                                    11        21        31        41        51        61        71        81        91       101       111       121       131

Chain C from PDB  Type:PROTEIN  Length:131
 aligned with B3DUZ7_METI4 | B3DUZ7 from UniProtKB/TrEMBL  Length:133

    Alignment length:131
                                    11        21        31        41        51        61        71        81        91       101       111       121       131 
         B3DUZ7_METI4     2 IDQKEKELIKESWKRIEPNKNEIGLLFYANLFKEEPTVSVLFQNPISSQSRKLMQVLGILVQGIDNLEGLIPTLQDLGRRHKQYGVVDSHYPLVGDCLLKSIQEYLGQGFTEEAKAAWTKVYGIAAQVMTA 132
               SCOP domains d3s1jc_ C: automated matches                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s1j C   2 IDQKEKELIKESWKRIEPNKNEIGLLFYANLFKEEPTVSVLFQNPISSQSRKLMQVLGILVQGIDNLEGLIPTLQDLGRRHKQYGVVDSHYPLVGDCLLKSIQEYLGQGFTEEAKAAWTKVYGIAAQVMTA 132
                                    11        21        31        41        51        61        71        81        91       101       111       121       131

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 3)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (B3DUZ7_METI4 | B3DUZ7)

molecular function
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0019825	oxygen binding	Interacting selectively and non-covalently with oxygen (O2).
	GO:0005344	oxygen transporter activity	Enables the directed movement of oxygen into, out of or within a cell, or between cells.
biological process
	GO:0015671	oxygen transport	The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

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