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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE OUTER MEMBRANE PROTEIN (BF2706) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 2.40 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  09 May 11  (Deposition) - 08 Jun 11  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Transmembrane Beta-Barrel, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Bacterial Outer Membran Protein (Bf2706) From Bacteroides Fragilis Nctc 9343 At 2. 4 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL BACTERIAL OUTER MEMBRANE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BF2706
    Organism Scientific: BACTEROIDES FRAGILIS
    Organism Taxid: 272559
    Strain: NCTC 9343
    Synonym: PUTATIVE LIPOPROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 36)

Asymmetric/Biological Unit (4, 36)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2MLY20Mod. Amino AcidN-DIMETHYL-LYSINE
3MSE7Mod. Amino AcidSELENOMETHIONINE
4SO42Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:175 , MLY A:181 , MLY A:197 , HOH A:322 , HOH A:359BINDING SITE FOR RESIDUE SO4 A 284
2AC2SOFTWAREGLY A:57 , GLU A:58 , MLY A:59BINDING SITE FOR RESIDUE SO4 A 285
3AC3SOFTWARETHR A:219 , SER A:236 , ILE A:237 , ASN A:238 , HOH A:405BINDING SITE FOR RESIDUE GOL A 286
4AC4SOFTWAREGLU A:162 , MSE A:278 , MLY A:280 , HOH A:326BINDING SITE FOR RESIDUE GOL A 287
5AC5SOFTWAREGLU A:58 , TYR A:153 , HIS A:154 , MLY A:283 , HOH A:392BINDING SITE FOR RESIDUE GOL A 288
6AC6SOFTWAREASP A:179 , SER A:200 , ASN A:201 , ASP A:215BINDING SITE FOR RESIDUE GOL A 289
7AC7SOFTWAREGLY A:157 , THR A:158 , SER A:171 , ILE A:184 , HOH A:360BINDING SITE FOR RESIDUE GOL A 290
8AC8SOFTWAREASN A:31 , MLY A:32BINDING SITE FOR RESIDUE GOL A 291
9AC9SOFTWARETHR A:254 , THR A:263BINDING SITE FOR RESIDUE GOL A 292

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RWX)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:254
 aligned with Q5LBW6_BACFN | Q5LBW6 from UniProtKB/TrEMBL  Length:283

    Alignment length:254
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279    
         Q5LBW6_BACFN    30 TNKAQEIAGKYEGYSIGNCAMFTDYVMGEKSVATIVPNEDGTINVTYDSGSGEFKLNNIKVTSKTFEGSGQVELSMNDKPAGAKDFTLTGSIDEQQKLTLKVNVPSVMGGLTIEFIQGTLPISYHVSGTYNKEANLSVSVGSTTYPDITDCKVSIKRSSDDTVELTLKGLSNLNSSQTGRAMNLGDFTVTDVKVTSTDNSIFKIEGSINTTDTNNTPITGTLSGTVSNSETNITFTFKPGAMPIDITAMFKGKK 283
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------Lipocalin_6-3rwxA01 A:154-280                                                                                                  --- Pfam domains
         Sec.struct. author .hhhhhhheeeeeeeeee......eeeeeeeeeeeee.....eeeeee....eeeeeee.....eeeeeeee...........eeeeeeeee.....eeeeeee......eeeeeee...hhhhhh.eee.eeeeeeeee..ee.......eeeeee....eeeeeeehhhhh.............eeeeeeeee......eeeeeeeeee.....eeeeeeeeeee..eeeeeeeeee......eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rwx A  30 TNkAQEIAGkYEGYSIGNCAmFTDYVmGEkSVATIVPNEDGTINVTYDSGSGEFkLNNIkVTSkTFEGSGQVELSmNDkPAGAkDFTLTGSIDEQQkLTLkVNVPSVmGGLTIEFIQGTLPISYHVSGTYNkEANLSVSVGSTTYPDITDCkVSIkRSSDDTVELTLkGLSNLNSSQTGRAmNLGDFTVTDVkVTSTDNSIFkIEGSINTTDTNNTPITGTLSGTVSNSETNITFTFkPGAmPIDITAmFkGkk 283
                              |     39        49|     | 59        69        79    |   89   |    99     | 109   |   119      |129|      139       149       159 |     169       179 |   | 189       199       209 |     219  |    229  |    239       249       259       269 |     279| ||
                              |     39-MLY     50-MSE |  |                       84-MLY|   |         105-MSE   |          126-MLY      |                     161-MLY             181-MLY         197-MLY       211-MSE    222-MLY   232-MLY                            267-MLY      | | ||
                             32-MLY                  56-MSE                           89-MLY            108-MLY|              130-MLY  |                                             185-MLY                                                                               271-MSE  | | ||
                                                        59-MLY                            93-MLY             113-MLY                 137-MSE                                                                                                                                      278-MSE|
                                                                                                                                                                                                                                                                                    280-MLY
                                                                                                                                                                                                                                                                                      282-MLY
                                                                                                                                                                                                                                                                                       283-MLY
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RWX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RWX)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Calycin (163)

(-) Gene Ontology  (0, 0)

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