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(-) Description

Title :  ATOMIC STRUCTURE OF BACTERIOPHAGE SF6 TAIL NEEDLE KNOB
 
Authors :  A. Bhardwaj, G. Cingolani
Date :  09 May 11  (Deposition) - 08 Jun 11  (Release) - 11 Apr 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.00
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Knob, Cell Membrane Penetration, Bacteriophage Sf6, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Bhardwaj, I. J. Molineux, S. R. Casjens, G. Cingolani
Atomic Structure Of Bacteriophage Sf6 Tail Needle Knob.
J. Biol. Chem. V. 286 30867 2011
PubMed-ID: 21705802  |  Reference-DOI: 10.1074/JBC.M111.260877

(-) Compounds

Molecule 1 - GENE 9 PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMAL-2CE
    Expression System Strain: BL21 (DE3) PLYSE
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 132-282
    Organism Common: SHIGELLA FLEXNERI BACTERIOPHAGE VI
    Organism Scientific: SHIGELLA PHAGE SF6
    Organism Taxid: 10761

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1GLU3Mod. Amino AcidGLUTAMIC ACID
2PO41Ligand/IonPHOSPHATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:17 , HOH A:43 , HOH A:120 , GLU A:146 , LYS A:200 , LYS A:277 , ILE A:279 , PHE C:247 , SER C:248 , ASP C:250 , PHE C:254 , LEU C:255BINDING SITE FOR RESIDUE GLU A 1
2AC2SOFTWARESER A:231 , ARG A:232 , ASN A:233 , SER B:231 , ARG B:232 , ASN B:233 , SER C:231 , ARG C:232 , ASN C:233BINDING SITE FOR RESIDUE PO4 A 283
3AC3SOFTWAREPHE A:247 , SER A:248 , ASP A:250 , PHE A:254 , LEU A:255 , HOH B:13 , HOH B:15 , HOH B:35 , GLU B:146 , LYS B:200 , LYS B:277 , ILE B:279BINDING SITE FOR RESIDUE GLU B 1
4AC4SOFTWAREPHE B:247 , SER B:248 , ASP B:250 , PHE B:254 , LEU B:255 , HOH C:6 , HOH C:21 , HOH C:82 , GLU C:146 , LYS C:200 , LYS C:277 , ILE C:279BINDING SITE FOR RESIDUE GLU C 1

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RWN)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ala A:178 -Pro A:179
2Ala B:178 -Pro B:179
3Ala C:178 -Pro C:179

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RWN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RWN)

(-) Exons   (0, 0)

(no "Exon" information available for 3RWN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:156
 aligned with Q716G6_BPSFV | Q716G6 from UniProtKB/TrEMBL  Length:282

    Alignment length:162
                                                                                                                                                                                          282 
                                   131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281| 
         Q716G6_BPSFV   122 LESQVSDHETRIDALEYATTRKKSEVVYSGVSVTIPTAPTNLVSLLKTLTPSSGTLAPFFDTVNNKMVVFNENKTLFFKLSIVGTWPSGTANRSMQLTFSGSVPDTLVSSRNSATTTDNILLATFFSVDKDGFLATNGSTLTIQSNGASFTATTIKIIAEQ-   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hh------hhhhhhhhhh...eeeeeeeeeeeee....eehhhhhh............ee....ee........eeeeeeeeee.......eeeeeee.....eeeeeee........eeeeeee.....hhhhhhh..eeeeee...eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3rwn A 128 FGS------SRIDALEYATTRKKSEVVYSGVSVTIPTAPTNLVSLLKTLTPSSGTLAPFFDTVNNKMVVFNENKTLFFKLSIVGTWPSGTANRSMQLTFSGSVPDTLVSSRNSATTTDNILLATFFSVDKDGFLATNGSTLTIQSNGASFTATTIKIIAEQE   1
                              |    131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281||
                              |    131                                                                                                                                                    282|
                            130                                                                                                                                                              1


Chain B from PDB  Type:PROTEIN  Length:155
 aligned with Q716G6_BPSFV | Q716G6 from UniProtKB/TrEMBL  Length:282

    Alignment length:155
                                                                                                                                                                                   282 
                                   138       148       158       168       178       188       198       208       218       228       238       248       258       268       278   | 
         Q716G6_BPSFV   129 HETRIDALEYATTRKKSEVVYSGVSVTIPTAPTNLVSLLKTLTPSSGTLAPFFDTVNNKMVVFNENKTLFFKLSIVGTWPSGTANRSMQLTFSGSVPDTLVSSRNSATTTDNILLATFFSVDKDGFLATNGSTLTIQSNGASFTATTIKIIAEQ-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh...eeeeeeeeeeeee....eehhhhhh............ee....ee........eeeeeeeeee.......eeeeeee.....eeeeeee........eeeeeee.....hhhhhhh..eeeeee...eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rwn B 129 GSSRIDALEYATTRKKSEVVYSGVSVTIPTAPTNLVSLLKTLTPSSGTLAPFFDTVNNKMVVFNENKTLFFKLSIVGTWPSGTANRSMQLTFSGSVPDTLVSSRNSATTTDNILLATFFSVDKDGFLATNGSTLTIQSNGASFTATTIKIIAEQE   1
                                   138       148       158       168       178       188       198       208       218       228       238       248       258       268       278   ||
                                                                                                                                                                                   282|
                                                                                                                                                                                      1


Chain C from PDB  Type:PROTEIN  Length:154
 aligned with Q716G6_BPSFV | Q716G6 from UniProtKB/TrEMBL  Length:282

    Alignment length:154
                                                                                                                                                                                  282 
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279  | 
         Q716G6_BPSFV   130 ETRIDALEYATTRKKSEVVYSGVSVTIPTAPTNLVSLLKTLTPSSGTLAPFFDTVNNKMVVFNENKTLFFKLSIVGTWPSGTANRSMQLTFSGSVPDTLVSSRNSATTTDNILLATFFSVDKDGFLATNGSTLTIQSNGASFTATTIKIIAEQ-   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh...eeeeeeeeeeeee....eehhhhhh............ee....ee........eeeeeeeeee.......eeeeeee.....eeeeeee........eeeeeee.....hhhhhhh..eeeeee...eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rwn C 130 SSRIDALEYATTRKKSEVVYSGVSVTIPTAPTNLVSLLKTLTPSSGTLAPFFDTVNNKMVVFNENKTLFFKLSIVGTWPSGTANRSMQLTFSGSVPDTLVSSRNSATTTDNILLATFFSVDKDGFLATNGSTLTIQSNGASFTATTIKIIAEQE   1
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279  ||
                                                                                                                                                                                  282|
                                                                                                                                                                                     1
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RWN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RWN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3RWN)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3RWN)

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  Cis Peptide Bonds
    Ala A:178 - Pro A:179   [ RasMol ]  
    Ala B:178 - Pro B:179   [ RasMol ]  
    Ala C:178 - Pro C:179   [ RasMol ]  
 

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