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(-) Description

Title :  STRUCTURE OF THE CHEY-MN2+ COMPLEX WITH SUBSTITUTIONS AT 59 AND 89: N59D E89K
 
Authors :  R. M. Immormino, C. A. Starbird, R. E. Silversmith, R. B. Bourret
Date :  06 May 11  (Deposition) - 09 May 12  (Release) - 21 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.15
Chains :  Asym./Biol. Unit :  A
Keywords :  Two-Component, Signal Transduction, Response Regulator, Chey, Beta- Alpha Protein, Chemotaxis, Chez, Chex, Chea, Phosphorylation, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. M. Immormino, C. A. Starbird, R. E. Silversmith, R. B. Bourret
Probing Mechanistic Similarities Between Response Regulator Signaling Proteins And Haloacid Dehalogenase Phosphatases.
Biochemistry V. 54 3514 2015
PubMed-ID: 25928369  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B00286

(-) Compounds

Molecule 1 - CHEMOTAXIS PROTEIN CHEY
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28ACHEYN59DE89K
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: B1882, CHEY, JW1871
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1MN1Ligand/IonMANGANESE (II) ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:13 , ASP A:57 , ASP A:59 , HOH A:290 , HOH A:291 , HOH A:312BINDING SITE FOR RESIDUE MN A 130

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RVQ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:109 -Pro A:110

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RVQ)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RESPONSE_REGULATORYPS50110 Response regulatory domain profile.CHEY_ECOLI7-124  1A:7-124

(-) Exons   (0, 0)

(no "Exon" information available for 3RVQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:128
 aligned with CHEY_ECOLI | P0AE67 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:128
                                    11        21        31        41        51        61        71        81        91       101       111       121        
           CHEY_ECOLI     2 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKLGM 129
               SCOP domains d3rvqa_ A: automated matches                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee..hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhh...eeeee......hhhhhhhhhhhh.......eeeeee.....hhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----RESPONSE_REGULATORY  PDB: A:7-124 UniProt: 7-124                                                                      ----- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rvq A   2 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKLGM 129
                                    11        21        31        41        51        61        71        81        91       101       111       121
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RVQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3RVQ)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (CHEY_ECOLI | P0AE67)
molecular function
    GO:0016407    acetyltransferase activity    Catalysis of the transfer of an acetyl group to an acceptor molecule.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0097588    archaeal or bacterial-type flagellum-dependent cell motility    Cell motility due to movement of bacterial- or archaeal-type flagella.
    GO:0071973    bacterial-type flagellum-dependent cell motility    Cell motility due to the motion of one or more bacterial-type flagella. A bacterial-type flagellum is a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope.
    GO:0006935    chemotaxis    The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
    GO:0018393    internal peptidyl-lysine acetylation    The addition of an acetyl group to a non-terminal lysine residue in a protein.
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0006473    protein acetylation    The addition of an acetyl group to a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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  3rvq
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CHEY_ECOLI | P0AE67: 1a0o 1ab5 1ab6 1bdj 1c4w 1cey 1chn 1cye 1d4z 1djm 1e6k 1e6l 1e6m 1eay 1ehc 1f4v 1ffg 1ffs 1ffw 1fqw 1hey 1jbe 1kmi 1mih 1u8t 1udr 1vlz 1ymu 1ymv 1zdm 2b1j 2id7 2id9 2idm 2lp4 3chy 3f7n 3fft 3ffw 3ffx 3fgz 3myy 3olv 3olw 3olx 3oly 3oo0 3oo1 3rvj 3rvk 3rvl 3rvm 3rvn 3rvo 3rvp 3rvr 3rvs 5chy 5d2c 5dgc 5dkf 6chy

(-) Related Entries Specified in the PDB File

1fqw STRUCTURE OF ACTIVATED CHEY
3rvj STRUCTURE OF THE CHEY-BEF3 COMPLEX WITH SUBSTITUTIONS AT 59 AND 89
3rvk STRUCTURE OF THE CHEY-MN2+ COMPLEX WITH SUBSTITUTIONS AT 59 AND 89
3rvl STRUCTURE OF THE CHEY-BEF3 COMPLEX WITH SUBSTITUTIONS AT 59 AND 89
3rvm STRUCTURE OF THE CHEY-MN2+ COMPLEX WITH SUBSTITUTIONS AT 59 AND 89
3rvn STRUCTURE OF THE CHEY-BEF3 COMPLEX WITH SUBSTITUTIONS AT 59 AND 89
3rvo STRUCTURE OF THE CHEY-MN2+ COMPLEX WITH SUBSTITUTIONS AT 59 AND 89
3rvp STRUCTURE OF THE CHEY-BEF3 COMPLEX WITH SUBSTITUTIONS AT 59 AND 89
3rvr STRUCTURE OF THE CHEY N59D/E89R MOLYBDATE COMPLEX
3rvs STRUCTURE OF THE CHEY N59D/E89R TUNGSTATE COMPLEX