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(-) Description

Title :  CRYSTAL STRUCTURE OF AMINOTRANSFERASE CLASS I AND II FROM VEILLONELLA PARVULA
 
Authors :  Y. Kim, C. Hatzos-Skintges, S. Clancy, A. Joachimiak, Midwest Center Structural Genomics (Mcsg)
Date :  27 Apr 11  (Deposition) - 18 May 11  (Release) - 18 May 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Alpha-Beta Structure, Transferase, Cytosol (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, C. Hatzos-Skintges, S. Clancy, A. Joachimiak
Crystal Structure Of Aminotransferase Class I And Ii From Veillonella Parvula
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - AMINOTRANSFERASE CLASS I AND II
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BM21 MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: VPAR_1105
    Organism Scientific: VEILLONELLA PARVULA
    Organism Taxid: 479436
    Strain: DSM 2008

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 42)

Asymmetric Unit (5, 42)
No.NameCountTypeFull Name
1AKG1Ligand/Ion2-OXOGLUTARIC ACID
2CL1Ligand/IonCHLORIDE ION
3GOL10Ligand/IonGLYCEROL
4MSE27Mod. Amino AcidSELENOMETHIONINE
5OAA3Ligand/IonOXALOACETATE ION
Biological Unit 1 (4, 23)
No.NameCountTypeFull Name
1AKG1Ligand/Ion2-OXOGLUTARIC ACID
2CL-1Ligand/IonCHLORIDE ION
3GOL6Ligand/IonGLYCEROL
4MSE14Mod. Amino AcidSELENOMETHIONINE
5OAA2Ligand/IonOXALOACETATE ION
Biological Unit 2 (3, 18)
No.NameCountTypeFull Name
1AKG-1Ligand/Ion2-OXOGLUTARIC ACID
2CL-1Ligand/IonCHLORIDE ION
3GOL4Ligand/IonGLYCEROL
4MSE13Mod. Amino AcidSELENOMETHIONINE
5OAA1Ligand/IonOXALOACETATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:121 , ASN A:177 , ASN A:216 , HOH A:500 , ALA C:5 , LYS C:7 , LYS C:10BINDING SITE FOR RESIDUE GOL A 421
02AC2SOFTWAREILE A:18 , PHE A:19 , GLY A:43 , TRP A:133 , ASN A:188 , TYR A:225 , LYS A:259 , ARG A:267 , PHE A:357 , ARG C:293BINDING SITE FOR RESIDUE OAA A 422
03AC3SOFTWARELYS A:15 , ARG A:137 , VAL A:138BINDING SITE FOR RESIDUE GOL A 423
04AC4SOFTWAREGLN A:26 , ARG A:34 , HIS A:46 , SER C:68 , AKG C:423BINDING SITE FOR RESIDUE GOL A 424
05AC5SOFTWAREILE B:18 , PHE B:19 , TRP B:133 , TYR B:225 , LYS B:259 , ARG B:267 , ARG B:387 , TYR D:73 , ARG D:293BINDING SITE FOR RESIDUE OAA B 422
06AC6SOFTWAREARG B:293 , GLY D:43 , TRP D:133 , TYR D:225 , LYS D:259 , GOL D:423BINDING SITE FOR RESIDUE GOL B 416
07AC7SOFTWAREGLN C:165 , SER C:201 , ASP C:208BINDING SITE FOR RESIDUE GOL C 421
08AC8SOFTWAREHOH A:546 , HIS C:8BINDING SITE FOR RESIDUE CL C 422
09AC9SOFTWAREPHE A:19 , GLN A:26 , LEU A:42 , GOL A:424 , GLY C:72 , TYR C:73 , ALA C:74 , PRO C:75 , ARG C:301BINDING SITE FOR RESIDUE AKG C 423
10BC1SOFTWAREHIS C:113 , ILE C:116 , HIS C:117 , THR C:143 , ARG C:145 , HOH C:512 , HOH C:542BINDING SITE FOR RESIDUE GOL C 424
11BC2SOFTWARETYR A:73 , ARG A:293 , ILE C:18 , GLY C:43 , TRP C:133 , ASN C:188 , TYR C:225 , LYS C:259 , PHE C:357 , HOH C:444BINDING SITE FOR RESIDUE OAA C 425
12BC3SOFTWARETYR A:73 , GLY C:107 , GLY C:108 , THR C:109 , SER C:256 , SER C:258 , ARG C:267BINDING SITE FOR RESIDUE GOL C 426
13BC4SOFTWAREARG D:301BINDING SITE FOR RESIDUE GOL D 421
14BC5SOFTWAREVAL B:4 , ALA B:5 , GLU D:121 , ASN D:177 , HOH D:511 , HOH D:512BINDING SITE FOR RESIDUE GOL D 416
15BC6SOFTWARETYR B:73 , SER B:297 , ASN B:298 , GOL B:416 , GLY D:107 , GLY D:108 , THR D:109 , TRP D:133 , SER D:256 , SER D:258 , ARG D:267BINDING SITE FOR RESIDUE GOL D 423

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RQ1)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Thr A:184 -Pro A:185
2Asn A:188 -Pro A:189
3Thr B:184 -Pro B:185
4Asn B:188 -Pro B:189
5Thr C:184 -Pro C:185
6Asn C:188 -Pro C:189
7Thr D:184 -Pro D:185
8Asn D:188 -Pro D:189

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RQ1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RQ1)

(-) Exons   (0, 0)

(no "Exon" information available for 3RQ1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:414
 aligned with D1BN29_VEIPT | D1BN29 from UniProtKB/TrEMBL  Length:415

    Alignment length:414
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411    
         D1BN29_VEIPT     2 TSVAAKHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPMLPYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAACGIPKCQMTGLAEKIYNAMKSLGKL 415
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhhhhhhhee...............hhhhhhhhhh.hhhhhhh......hhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhh....eeeee....hhhhhhhhhh..eeeee.........hhhhhhhhhhhhhhhh.eeeeeee...........hhhhhhhhhhhhhhhhhh...eeeeeee..hhhhh.hhhhhhhhhhhhh.....eeeeeeee............eeeeeee.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeee..hhhhhhhhhhhh.ee.ee...eeeee.hhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3rq1 A   2 TSVAAKHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTmYGQRVGAmIGISDDEEIADEFFEVNKSTSRATWSNICRPAmRTmANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPmLPYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAACGIPKCQmTGLAEKIYNAmKSLGKL 415
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261 |     271       281       291       301  |  | 311       321       331       341       351       361       371       381       391      |401       411    
                                                                                                                                                                                                                                                                                               263-MSE 271-MSE                          304-MSE                                      349-MSE                                          398-MSE    409-MSE  
                                                                                                                                                                                                                                                                                                                                           307-MSE                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:414
 aligned with D1BN29_VEIPT | D1BN29 from UniProtKB/TrEMBL  Length:415

    Alignment length:414
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411    
         D1BN29_VEIPT     2 TSVAAKHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPMLPYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAACGIPKCQMTGLAEKIYNAMKSLGKL 415
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhhhhhhee...............hhhhhhhhhh.hhhhhhh......hhhhhhhhhhhhhh......eeeeeeehhhhhhhhhhhhhhh....eeeee....hhhhhhhhhh..eeeee.........hhhhhhhhhhhhhhhh.eeeeeee...........hhhhhhhhhhhhhhhhhh...eeeeeee..hhhhh.hhhhhhhhhhhhh.....eeeeeeee............eeeeeee.hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeee..hhhhhhhhhhhh.ee.ee...eeeee.hhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3rq1 B   2 TSVAAKHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTmYGQRVGAmIGISDDEEIADEFFEVNKSTSRATWSNICRPAmRTmANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPmLPYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAACGIPKCQmTGLAEKIYNAmKSLGKL 415
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261 |     271       281       291       301  |  | 311       321       331       341       351       361       371       381       391      |401       411    
                                                                                                                                                                                                                                                                                               263-MSE 271-MSE                          304-MSE                                      349-MSE                                          398-MSE    409-MSE  
                                                                                                                                                                                                                                                                                                                                           307-MSE                                                                                                        


Chain C from PDB  Type:PROTEIN  Length:413
 aligned with D1BN29_VEIPT | D1BN29 from UniProtKB/TrEMBL  Length:415

    Alignment length:413
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411   
         D1BN29_VEIPT     2 TSVAAKHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPMLPYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAACGIPKCQMTGLAEKIYNAMKSLGK 414
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh...hhhhhhhhhhhhhhhhhhhhhheee..............hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhh....eeeee.....hhhhhhhh...eeeee.........hhhhhhhhhhhhhhhh.eeeeeee...........hhhhhhhhhhhhhhhhh....eeeeeee..hhhhh.hhhhhhhhhhhhh.....eeeeeeee............eeeeeee.hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeee..hhhhhhhhhh...eeeee...eeeee....hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rq1 C   2 TSVAAKHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTmYGQRVGAmIGISDDEEIADEFFEVNKSTSRATWSNICRPAmRTmANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPmLPYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAACGIPKCQmTGLAEKIYNAmKSLGK 414
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261 |     271       281       291       301  |  | 311       321       331       341       351       361       371       381       391      |401       411   
                                                                                                                                                                                                                                                                                               263-MSE 271-MSE                          304-MSE                                      349-MSE                                          398-MSE    409-MSE 
                                                                                                                                                                                                                                                                                                                                           307-MSE                                                                                                       


Chain D from PDB  Type:PROTEIN  Length:392
 aligned with D1BN29_VEIPT | D1BN29 from UniProtKB/TrEMBL  Length:415

    Alignment length:410
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411
         D1BN29_VEIPT     2 TSVAAKHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPMLPYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAACGIPKCQMTGLAEKIYNAMKS 411
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------------------           Aminotran_1_2-3rq1D01 D:39-405                                                                                                                                                                                                                                                                                                                                                 ------ Pfam domains (1)
           Pfam domains (2) --------------------------           Aminotran_1_2-3rq1D02 D:39-405                                                                                                                                                                                                                                                                                                                                                 ------ Pfam domains (2)
           Pfam domains (3) --------------------------           Aminotran_1_2-3rq1D03 D:39-405                                                                                                                                                                                                                                                                                                                                                 ------ Pfam domains (3)
           Pfam domains (4) --------------------------           Aminotran_1_2-3rq1D04 D:39-405                                                                                                                                                                                                                                                                                                                                                 ------ Pfam domains (4)
         Sec.struct. author ..............hhhhhhhhhhhh-----------................hhhhhhhhhh.hhhhhhh......hhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhh....eeeee....hhhhhhhhh...eeeee.........hhhhhhhhhhhhhhhh.eeeeeee...........hhhhhhhhhhhhhhhhhh...eeeeeee..hhhhh.hhhhhhhhhhhhh.....eeeeeeee............eeeeeee.hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeee...hhhhhhhhhhh....eee..eeeee.hhh-------hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rq1 D   2 TSVAAKHAKGKKLKDVIFVTAGQAQA-----------NGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTmYGQRVGAmIGISDDEEIADEFFEVNKSTSRATWSNICRPAmRTmANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPmLPYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAACGI-------LAEKIYNAmKS 411
                                    11        21     |   -       |41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261 |     271       281       291       301  |  | 311       321       331       341       351       361       371       381       391 |     401       411
                                                    27          39                                                                                                                                                                                                                             263-MSE 271-MSE                          304-MSE                                      349-MSE                                     393     401     409-MSE
                                                                                                                                                                                                                                                                                                                                           307-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RQ1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RQ1)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: PLP_aminotran (240)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (D1BN29_VEIPT | D1BN29)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0030170    pyridoxal phosphate binding    Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
    GO:0008483    transaminase activity    Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

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