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(-) Description

Title :  CRYSTAL STRUCTURE OF AN UNCHARACTERIZED DUF3829-LIKE PROTEIN (BT_1908) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 2.10 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  11 Apr 11  (Deposition) - 04 May 11  (Release) - 04 May 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  All Alpha Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of An Uncharacterized Duf3829-Like Protei (Bt_1908) From Bacteroides Thetaiotaomicron Vpi-5482 At 2. 1 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED DUF3829-LIKE PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BT_1908
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON
    Organism Taxid: 226186
    Strain: VPI-5482

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 28)

Asymmetric Unit (3, 28)
No.NameCountTypeFull Name
1EDO5Ligand/Ion1,2-ETHANEDIOL
2MSE22Mod. Amino AcidSELENOMETHIONINE
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (3, 14)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2MSE11Mod. Amino AcidSELENOMETHIONINE
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (2, 14)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2MSE11Mod. Amino AcidSELENOMETHIONINE
3PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:42 , GLY A:99 , ASP A:100 , TYR A:101BINDING SITE FOR RESIDUE PEG A 290
2AC2SOFTWAREGLU A:71 , LYS A:209 , HIS A:210 , TYR A:270BINDING SITE FOR RESIDUE EDO A 294
3AC3SOFTWAREALA A:58 , ILE A:63 , SER A:154 , SER A:158 , LYS A:161 , ASN A:204BINDING SITE FOR RESIDUE EDO A 295
4AC4SOFTWARETYR B:101 , PHE B:102 , ASN B:103 , VAL B:106 , LEU B:171BINDING SITE FOR RESIDUE EDO B 291
5AC5SOFTWAREALA B:58 , ILE B:63 , SER B:154 , SER B:158 , LYS B:161 , ASN B:204 , SER B:207BINDING SITE FOR RESIDUE EDO B 292
6AC6SOFTWARETYR B:284 , GLY B:285 , SER B:287BINDING SITE FOR RESIDUE EDO B 293

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RH3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3RH3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RH3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RH3)

(-) Exons   (0, 0)

(no "Exon" information available for 3RH3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:239
 aligned with Q8A6H6_BACTN | Q8A6H6 from UniProtKB/TrEMBL  Length:289

    Alignment length:256
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283      
         Q8A6H6_BACTN    34 TEELDDASKVINYYHMSLAVLRHVANAKDINAVLGYMEQTGKVPEVDPIAPPEIAARDTAELLDPGDYFNPEVRQNLKQNYAGLFNVRTQFYDNFNKFLAYKKSKDTAKTAQLLDENYKLSVELSEYKQVIFDILSPLTEQAESELLADEPLKDQIMAMRKMSGTVQSIMNLYSRKHAMDGVRIDLKMAELEKELKAAEKIPAVTGYDEELKNFQSFLSTVKSFMNDMQKARSKGAYSDKEYQAMSEAYEYGLSVI 289
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..-----------------hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rh3 A  34 TEELDDASKVINYYHmSLAVLRHVANAKDINAVLGYmEQTG-----------------TAELLDPGDYFNPEVRQNLKQNYAGLFNVRTQFYDNFNKFLAYKKSKDTAKTAQLLDENYKLSVELSEYKQVIFDILSPLTEQAESELLADEPLKDQImAmRKmSGTVQSImNLYSRKHAmDGVRIDLKmAELEKELKAAEKIPAVTGYDEELKNFQSFLSTVKSFmNDmQKARSKGAYSDKEYQAmSEAYEYGLSVI 289
                                    43     |  53        63      | 73|        -        93       103       113       123       133       143       153       163       173       183      |193 |     203       213       223       233       243       253    |  263       273    |  283      
                                          49-MSE               70-MSE                92                                                                                               190-MSE|     203-MSE  212-MSE  221-MSE                              258-MSE             278-MSE       
                                                                                                                                                                                        192-MSE                                                              261-MSE                        
                                                                                                                                                                                           195-MSE                                                                                          


Chain B from PDB  Type:PROTEIN  Length:237
 aligned with Q8A6H6_BACTN | Q8A6H6 from UniProtKB/TrEMBL  Length:289

    Alignment length:256
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283      
         Q8A6H6_BACTN    34 TEELDDASKVINYYHMSLAVLRHVANAKDINAVLGYMEQTGKVPEVDPIAPPEIAARDTAELLDPGDYFNPEVRQNLKQNYAGLFNVRTQFYDNFNKFLAYKKSKDTAKTAQLLDENYKLSVELSEYKQVIFDILSPLTEQAESELLADEPLKDQIMAMRKMSGTVQSIMNLYSRKHAMDGVRIDLKMAELEKELKAAEKIPAVTGYDEELKNFQSFLSTVKSFMNDMQKARSKGAYSDKEYQAMSEAYEYGLSVI 289
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----DUF3829-3rh3B01 B:39-285                                                                                                                                                                                                                               ---- Pfam domains (1)
           Pfam domains (2) -----DUF3829-3rh3B02 B:39-285                                                                                                                                                                                                                               ---- Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-------------------.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rh3 B  34 TEELDDASKVINYYHmSLAVLRHVANAKDINAVLGYmEQ-------------------TAELLDPGDYFNPEVRQNLKQNYAGLFNVRTQFYDNFNKFLAYKKSKDTAKTAQLLDENYKLSVELSEYKQVIFDILSPLTEQAESELLADEPLKDQImAmRKmSGTVQSImNLYSRKHAmDGVRIDLKmAELEKELKAAEKIPAVTGYDEELKNFQSFLSTVKSFmNDmQKARSKGAYSDKEYQAmSEAYEYGLSVI 289
                                    43     |  53        63      | |-         -        93       103       113       123       133       143       153       163       173       183      |193 |     203       213       223       233       243       253    |  263       273    |  283      
                                          49-MSE               70-MSE                92                                                                                               190-MSE|     203-MSE  212-MSE  221-MSE                              258-MSE             278-MSE       
                                                                 72                                                                                                                     192-MSE                                                              261-MSE                        
                                                                                                                                                                                           195-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RH3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RH3)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: DUF3829] (1)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3RH3)

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