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(-) Description

Title :  CRYSTAL STRUCTURE OF PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE MOAB2 FROM MYCOBACTERIUM MARINUM
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  06 Apr 11  (Deposition) - 04 May 11  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (2x)
Keywords :  Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Ortholog, Mycobacterium, Tuberculosis, Water Contaminant, Cofactor Iosynthesis, Molybdenum Cofactor, Gtp, Pterin, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
PubMed-ID: 25613812  |  Reference-DOI: 10.1016/J.TUBE.2014.12.003

(-) Compounds

Molecule 1 - PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE MOAB2
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PAVA0421
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MMAR_4526, MOAB2
    Organism Scientific: MYCOBACTERIUM MARINUM
    Organism Taxid: 216594
    Strain: ATCC BAA-535/M

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1B3P1Ligand/Ion2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2NA2Ligand/IonSODIUM ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1B3P2Ligand/Ion2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2NA-1Ligand/IonSODIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:124 , ASP A:160 , HOH A:205 , HOH A:232 , HOH A:255 , SER B:124 , ASP B:160 , HOH B:219BINDING SITE FOR RESIDUE NA A 181
2AC2SOFTWAREASN A:78 , GLU A:108 , ILE A:109 , LEU A:110 , ASP A:111 , SER A:143 , GLY A:144 , HOH A:250 , GLY B:83BINDING SITE FOR RESIDUE B3P A 182
3AC3SOFTWARESER C:124 , ASP C:160 , HOH C:276 , HOH C:283BINDING SITE FOR RESIDUE NA C 181

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RFQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3RFQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RFQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RFQ)

(-) Exons   (0, 0)

(no "Exon" information available for 3RFQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:154
 aligned with B2HEA7_MYCMM | B2HEA7 from UniProtKB/TrEMBL  Length:181

    Alignment length:154
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173    
         B2HEA7_MYCMM    24 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPRDVTPESTREILDREILGIAEAIRASGLSAGIIDAGLSRGLAGVSGSTLVVNLAGSRYAVRDGMATLNPLAAHIIGQLS 177
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeehhhhhh....hhhhhhhhhhhhh.eeeeeeeee..hhhhhhhhhhhhhhh...eeeee.........hhhhhhhh...eehhhhhhhhhhhhhhh.hhhhhh....eeee..eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rfq A  24 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPRDVTPESTREILDREILGIAEAIRASGLSAGIIDAGLSRGLAGVSGSTLVVNLAGSRYAVRDGMATLNPLAAHIIGQLS 177
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173    


Chain B from PDB  Type:PROTEIN  Length:154
 aligned with B2HEA7_MYCMM | B2HEA7 from UniProtKB/TrEMBL  Length:181

    Alignment length:154
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173    
         B2HEA7_MYCMM    24 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPRDVTPESTREILDREILGIAEAIRASGLSAGIIDAGLSRGLAGVSGSTLVVNLAGSRYAVRDGMATLNPLAAHIIGQLS 177
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeehhhhhh.....hhhhhhhhhhhh.eeeeeeeee..hhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhh.eehhhhhhhhhhhhhhh.hhhhhh....eeee..eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rfq B  24 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPRDVTPESTREILDREILGIAEAIRASGLSAGIIDAGLSRGLAGVSGSTLVVNLAGSRYAVRDGMATLNPLAAHIIGQLS 177
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173    


Chain C from PDB  Type:PROTEIN  Length:157
 aligned with B2HEA7_MYCMM | B2HEA7 from UniProtKB/TrEMBL  Length:181

    Alignment length:157
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       
         B2HEA7_MYCMM    20 GAELVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPRDVTPESTREILDREILGIAEAIRASGLSAGIIDAGLSRGLAGVSGSTLVVNLAGSRYAVRDGMATLNPLAAHIIGQL 176
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---MoCF_biosynth-3rfqC01 C:23-171                                                                                                                       ----- Pfam domains (1)
           Pfam domains (2) ---MoCF_biosynth-3rfqC02 C:23-171                                                                                                                       ----- Pfam domains (2)
           Pfam domains (3) ---MoCF_biosynth-3rfqC03 C:23-171                                                                                                                       ----- Pfam domains (3)
         Sec.struct. author ......eeeeeeeehhhhhh.....hhhhhhhhhhhh.eeeeeeeee..hhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhh.eehhhhhhhhhhhhhhh.hhhhhh....eeee..eeeeee..hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rfq C  20 GAELVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPRDVTPESTREILDREILGIAEAIRASGLSAGIIDAGLSRGLAGVSGSTLVVNLAGSRYAVRDGMATLNPLAAHIIGQL 176
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RFQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RFQ)

(-) Pfam Domains  (1, 3)

Asymmetric Unit
(-)
Clan: no clan defined [family: MoCF_biosynth] (31)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3RFQ)

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3oi9 SIMILAR PROTEIN FROM MYCOBACTERIUM AVIUM RELATED ID: MYMAA.00778.A RELATED DB: TARGETDB