Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF CBD12 FROM CALX1.2
 
Authors :  M. Wu, L. Zheng
Date :  28 Mar 11  (Deposition) - 02 Nov 11  (Release) - 02 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,E,G
Biol. Unit 1:  A,G  (1x)
Biol. Unit 2:  B,E  (1x)
Keywords :  Calcium Binding Domain, Calcium Binding, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Wu, S. Tong, J. Gonzalez, V. Jayaraman, J. L. Spudich, L. Zheng
Structural Basis Of The Ca(2+) Inhibitory Mechanism Of Drosophila Na(+)/Ca(2+) Exchanger Calx And Its Modification By Alternative Splicing.
Structure V. 19 1509 2011
PubMed-ID: 22000518  |  Reference-DOI: 10.1016/J.STR.2011.07.008

(-) Compounds

Molecule 1 - NA/CA EXCHANGE PROTEIN
    Chains: A, B, E, G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CALX, NCX, CG5685
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABEG
Biological Unit 1 (1x): A  G
Biological Unit 2 (1x):  BE 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 20)

Asymmetric Unit (2, 20)
No.NameCountTypeFull Name
1CA16Ligand/IonCALCIUM ION
2SO44Ligand/IonSULFATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2SO42Ligand/IonSULFATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2SO42Ligand/IonSULFATE ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:484 , ASP A:490 , GLU A:520 , GLU A:523BINDING SITE FOR RESIDUE CA A 1
02AC2SOFTWAREGLU A:455 , ASP A:515 , ASP A:516 , ASP A:551 , ASP A:552BINDING SITE FOR RESIDUE CA A 2
03AC3SOFTWAREGLU A:455 , ASP A:516 , VAL A:518 , GLU A:520 , ASP A:550 , ASP A:552BINDING SITE FOR RESIDUE CA A 3
04AC4SOFTWAREGLU A:455 , ASP A:490 , GLU A:520BINDING SITE FOR RESIDUE CA A 4
05AC5SOFTWAREARG A:494 , PHE A:509 , ARG A:510 , ARG G:510BINDING SITE FOR RESIDUE SO4 A 731
06AC6SOFTWAREARG B:494 , PHE B:509 , ARG B:510BINDING SITE FOR RESIDUE SO4 B 2
07AC7SOFTWARECA B:4 , ASP B:490 , GLU B:520 , GLU B:523BINDING SITE FOR RESIDUE CA B 1
08AC8SOFTWAREGLU B:455 , ASP B:515 , ASP B:516 , ASP B:551 , ASP B:552 , ARG B:584BINDING SITE FOR RESIDUE CA B 731
09AC9SOFTWAREGLU B:455 , ASP B:516 , VAL B:518 , GLU B:520 , ASP B:550 , ASP B:552BINDING SITE FOR RESIDUE CA B 3
10BC1SOFTWARECA B:1 , GLU B:455 , ASP B:490 , ILE B:514 , ASP B:516 , GLU B:520BINDING SITE FOR RESIDUE CA B 4
11BC2SOFTWARETHR E:489 , ASP E:490 , GLU E:520BINDING SITE FOR RESIDUE CA E 1
12BC3SOFTWAREGLU E:455 , ASP E:515 , ASP E:516 , ASP E:551 , ASP E:552BINDING SITE FOR RESIDUE CA E 2
13BC4SOFTWAREGLU E:455 , ASP E:516 , VAL E:518 , GLU E:520 , ASP E:550 , ASP E:552BINDING SITE FOR RESIDUE CA E 3
14BC5SOFTWAREGLU E:455 , ASP E:490 , ASP E:516 , GLU E:520BINDING SITE FOR RESIDUE CA E 4
15BC6SOFTWAREARG B:510 , ARG E:494 , ARG E:508 , PHE E:509 , ARG E:510BINDING SITE FOR RESIDUE SO4 E 731
16BC7SOFTWAREASP G:490 , GLU G:520 , GLU G:523BINDING SITE FOR RESIDUE CA G 1
17BC8SOFTWAREGLU G:455 , ASP G:515 , ASP G:516 , ASP G:551 , ASP G:552BINDING SITE FOR RESIDUE CA G 2
18BC9SOFTWAREGLU G:455 , ASP G:516 , VAL G:518 , GLU G:520 , ASP G:550 , ASP G:552BINDING SITE FOR RESIDUE CA G 3
19CC1SOFTWAREGLU G:455 , ASP G:490 , GLU G:520 , ILE G:548BINDING SITE FOR RESIDUE CA G 4
20CC2SOFTWAREARG A:510 , ARG G:494 , ARG G:508 , PHE G:509 , ARG G:510BINDING SITE FOR RESIDUE SO4 G 731

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RB7)

(-) Cis Peptide Bonds  (13, 13)

Asymmetric Unit
No.Residues
1Glu A:447 -Pro A:448
2Val A:540 -Pro A:541
3Ala A:554 -Gly A:555
4Val A:570 -Gly A:571
5Glu B:447 -Pro B:448
6Val B:540 -Pro B:541
7Ala B:554 -Gly B:555
8Glu E:447 -Pro E:448
9Val E:540 -Pro E:541
10Ala E:554 -Gly E:555
11Glu G:447 -Pro G:448
12Val G:540 -Pro G:541
13Ala G:554 -Gly G:555

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RB7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RB7)

(-) Exons   (0, 0)

(no "Exon" information available for 3RB7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:248
 aligned with Q24413_DROME | Q24413 from UniProtKB/TrEMBL  Length:950

    Alignment length:253
                                   451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691   
         Q24413_DROME   442 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFIDLFILEESSYEKDVSFKVHIGEPRLAPDDGLAAKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVRIRE 694
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...eeeee....ee..eeee.......eeeeeeee.............eeeeee.....eee..ee..........eeeeeeee......ee....eeeeeee......eeee....eee.....eeeeeeeee......eeeeeeee.............eeeeee.....eeeeeee.-----....eeeeeee...ee.....hhhhhhhhh.......hhhhhhhhhhh.......eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rb7 A 442 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFIDLFI-----YEKDVSFKVHIGEPRLAPDSTHYPKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVRIRE 694
                                   451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621    |    -|      641       651       661       671       681       691   
                                                                                                                                                                                                                  626   632                                                              


Chain A from PDB  Type:PROTEIN  Length:248
 aligned with Q9VDG5_DROME | Q9VDG5 from UniProtKB/TrEMBL  Length:950

    Alignment length:253
                                   451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691   
         Q9VDG5_DROME   442 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFIDLFILEESSYEKDVSFKVHIGEPRLAPDDELAAKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVRIRE 694
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...eeeee....ee..eeee.......eeeeeeee.............eeeeee.....eee..ee..........eeeeeeee......ee....eeeeeee......eeee....eee.....eeeeeeeee......eeeeeeee.............eeeeee.....eeeeeee.-----....eeeeeee...ee.....hhhhhhhhh.......hhhhhhhhhhh.......eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rb7 A 442 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFIDLFI-----YEKDVSFKVHIGEPRLAPDSTHYPKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVRIRE 694
                                   451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621    |    -|      641       651       661       671       681       691   
                                                                                                                                                                                                                  626   632                                                              


Chain B from PDB  Type:PROTEIN  Length:242
 aligned with Q24413_DROME | Q24413 from UniProtKB/TrEMBL  Length:950

    Alignment length:251
                                   451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691 
         Q24413_DROME   442 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFIDLFILEESSYEKDVSFKVHIGEPRLAPDDGLAAKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVRI 692
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...eeee.....eeeeeeee.........eeeeee.............eeee.......eeeeeee.............eee........ee....eeeeee.......eeee...eee......eeeeeeeee......eeeeeeee.............eeeeee.....eeeeeee.---------.eeeeee...ee.....hhhhhhhhhhhhhhhhhhhhhhhhh...ee....eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rb7 B 442 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFIDLFI---------VSFKVHIGEPRLAPDSTHYPKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVRI 692
                                   451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621    |    -    |  641       651       661       671       681       691 
                                                                                                                                                                                                                  626       636                                                        


Chain B from PDB  Type:PROTEIN  Length:242
 aligned with Q9VDG5_DROME | Q9VDG5 from UniProtKB/TrEMBL  Length:950

    Alignment length:251
                                   451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691 
         Q9VDG5_DROME   442 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFIDLFILEESSYEKDVSFKVHIGEPRLAPDDELAAKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVRI 692
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...eeee.....eeeeeeee.........eeeeee.............eeee.......eeeeeee.............eee........ee....eeeeee.......eeee...eee......eeeeeeeee......eeeeeeee.............eeeeee.....eeeeeee.---------.eeeeee...ee.....hhhhhhhhhhhhhhhhhhhhhhhhh...ee....eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rb7 B 442 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFIDLFI---------VSFKVHIGEPRLAPDSTHYPKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVRI 692
                                   451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621    |    -    |  641       651       661       671       681       691 
                                                                                                                                                                                                                  626       636                                                        


Chain E from PDB  Type:PROTEIN  Length:248
 aligned with Q24413_DROME | Q24413 from UniProtKB/TrEMBL  Length:950

    Alignment length:252
                                   451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691  
         Q24413_DROME   442 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFIDLFILEESSYEKDVSFKVHIGEPRLAPDDGLAAKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVRIR 693
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee......ee...eeeeeeeeee.......eeeeeee.............eeeee.......eeeeeee.........eeeeeeee............eeeeeee......eeee...eee.hhhhh.ee..eeee......eeeeeeee...............eeee.....ee..ee.......----.eeeeee...ee....hhhhhhhhhhhhhhhhhhhhhhhhhh...ee....eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3rb7 E 442 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFIDLFILEESS----VSFKVHIGEPRLAPDSTHYPKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVRIR 693
                                   451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631    |  641       651       661       671       681       691  
                                                                                                                                                                                                                       631  636                                                         


Chain E from PDB  Type:PROTEIN  Length:248
 aligned with Q9VDG5_DROME | Q9VDG5 from UniProtKB/TrEMBL  Length:950

    Alignment length:252
                                   451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691  
         Q9VDG5_DROME   442 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFIDLFILEESSYEKDVSFKVHIGEPRLAPDDELAAKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVRIR 693
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee......ee...eeeeeeeeee.......eeeeeee.............eeeee.......eeeeeee.........eeeeeeee............eeeeeee......eeee...eee.hhhhh.ee..eeee......eeeeeeee...............eeee.....ee..ee.......----.eeeeee...ee....hhhhhhhhhhhhhhhhhhhhhhhhhh...ee....eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3rb7 E 442 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFIDLFILEESS----VSFKVHIGEPRLAPDSTHYPKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVRIR 693
                                   451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631    |  641       651       661       671       681       691  
                                                                                                                                                                                                                       631  636                                                         


Chain G from PDB  Type:PROTEIN  Length:244
 aligned with Q24413_DROME | Q24413 from UniProtKB/TrEMBL  Length:950

    Alignment length:251
                                   451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691 
         Q24413_DROME   442 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFIDLFILEESSYEKDVSFKVHIGEPRLAPDDGLAAKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVRI 692
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...eeeee....eeeeeeee.......eeeeeeee.............eeeeee.....eeeeeee..........eeeeeeee......ee....eeeeeee......eeee....ee......eeeeeeeee......eeeeeeee...............eeee......eeeeee..-------..eeeeee...ee......hhhhhhhh........hhhhhhhhh..ee.......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rb7 G 442 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFIDLFIL-------DVSFKVHIGEPRLAPDSTHYPKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVRI 692
                                   451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621     |   -   |   641       651       661       671       681       691 
                                                                                                                                                                                                                   627     635                                                         


Chain G from PDB  Type:PROTEIN  Length:244
 aligned with Q9VDG5_DROME | Q9VDG5 from UniProtKB/TrEMBL  Length:950

    Alignment length:251
                                   451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691 
         Q9VDG5_DROME   442 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFIDLFILEESSYEKDVSFKVHIGEPRLAPDDELAAKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVRI 692
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...eeeee....eeeeeeee.......eeeeeeee.............eeeeee.....eeeeeee..........eeeeeeee......ee....eeeeeee......eeee....ee......eeeeeeeee......eeeeeeee...............eeee......eeeeee..-------..eeeeee...ee......hhhhhhhh........hhhhhhhhh..ee.......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rb7 G 442 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFIDLFIL-------DVSFKVHIGEPRLAPDSTHYPKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVRI 692
                                   451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621     |   -   |   641       651       661       671       681       691 
                                                                                                                                                                                                                   627     635
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RB7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RB7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3RB7)

(-) Gene Ontology  (12, 23)

Asymmetric Unit(hide GO term definitions)
Chain A,B,E,G   (Q9VDG5_DROME | Q9VDG5)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0005432    calcium:sodium antiporter activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0006816    calcium ion transport    The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0007154    cell communication    Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
    GO:0050884    neuromuscular process controlling posture    Any process in which an organism voluntarily modulates its posture, the alignment of its anatomical parts.
    GO:0007602    phototransduction    The sequence of reactions within a cell required to convert absorbed photons into a molecular signal.
    GO:0034976    response to endoplasmic reticulum stress    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stress acting at the endoplasmic reticulum. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen.
    GO:0035725    sodium ion transmembrane transport    A process in which a sodium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0055085    transmembrane transport    The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain A,B,E,G   (Q24413_DROME | Q24413)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0005432    calcium:sodium antiporter activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in).
biological process
    GO:0006816    calcium ion transport    The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0007154    cell communication    Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
    GO:0050884    neuromuscular process controlling posture    Any process in which an organism voluntarily modulates its posture, the alignment of its anatomical parts.
    GO:0007602    phototransduction    The sequence of reactions within a cell required to convert absorbed photons into a molecular signal.
    GO:0034976    response to endoplasmic reticulum stress    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stress acting at the endoplasmic reticulum. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen.
    GO:0035725    sodium ion transmembrane transport    A process in which a sodium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0055085    transmembrane transport    The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala A:554 - Gly A:555   [ RasMol ]  
    Ala B:554 - Gly B:555   [ RasMol ]  
    Ala E:554 - Gly E:555   [ RasMol ]  
    Ala G:554 - Gly G:555   [ RasMol ]  
    Glu A:447 - Pro A:448   [ RasMol ]  
    Glu B:447 - Pro B:448   [ RasMol ]  
    Glu E:447 - Pro E:448   [ RasMol ]  
    Glu G:447 - Pro G:448   [ RasMol ]  
    Val A:540 - Pro A:541   [ RasMol ]  
    Val A:570 - Gly A:571   [ RasMol ]  
    Val B:540 - Pro B:541   [ RasMol ]  
    Val E:540 - Pro E:541   [ RasMol ]  
    Val G:540 - Pro G:541   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3rb7
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q24413_DROME | Q24413
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  Q9VDG5_DROME | Q9VDG5
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q24413_DROME | Q24413
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  Q9VDG5_DROME | Q9VDG5
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q24413_DROME | Q24413: 3e9t 3ead 3rb5
UniProtKB/TrEMBL
        Q24413_DROME | Q24413: 3e9u
        Q9VDG5_DROME | Q9VDG5: 3e9t 3ead 3rb5

(-) Related Entries Specified in the PDB File

3rb5