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(-) Description

Title :  2.23 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE (MURA) FROM LISTERIA MONOCYTOGENES EGD-E
 
Authors :  A. S. Halavaty, G. Minasov, L. Shuvalova, I. Dubrovska, J. Winsor, S. Pe W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date :  15 Mar 11  (Deposition) - 23 Mar 11  (Release) - 23 Mar 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.23
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  A  (2x)
Keywords :  Biosynthesis And Degradation Of Murein Sacculus And Peptidoglycan, Infectious Diseases, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Adds Enolpyruvyl To Udp-N- Acetylglucosamine As A Component Of Cell Wall Formation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. S. Halavaty, G. Minasov, L. Shuvalova, I. Dubrovska, J. Winsor, S. Peterson, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
2. 23 Angstrom Resolution Crystal Structure Of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase (Mura) From Listeria Monocytogenes Egd-E
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE 1
    ChainsA
    EC Number2.5.1.7
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPMCSG7
    Expression System StrainBL21 MAGIC
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    GeneLMO2526, MURA, MURA1
    Organism ScientificLISTERIA MONOCYTOGENES
    Organism Taxid1639
    StrainEGD-E
    SynonymENOYLPYRUVATE TRANSFERASE 1, UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYL TRANSFERASE 1, EPT 1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A
Biological Unit 2 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric Unit (2, 11)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2SO410Ligand/IonSULFATE ION
Biological Unit 1 (1, 20)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2SO420Ligand/IonSULFATE ION
Biological Unit 2 (1, 20)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2SO420Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:370 , ARG A:397BINDING SITE FOR RESIDUE CL A 431
02AC2SOFTWAREGLN A:201 , HIS A:227 , SER A:228 , HOH A:550BINDING SITE FOR RESIDUE SO4 A 432
03AC3SOFTWARESER A:163 , VAL A:164 , GLY A:165 , PHE A:328 , HOH A:515 , HOH A:557 , HOH A:603BINDING SITE FOR RESIDUE SO4 A 433
04AC4SOFTWAREARG A:93 , TYR A:394 , ARG A:397BINDING SITE FOR RESIDUE SO4 A 434
05AC5SOFTWAREARG A:93 , GLY A:116 , CYS A:117 , ALA A:118 , ILE A:119 , SER A:121BINDING SITE FOR RESIDUE SO4 A 435
06AC6SOFTWAREARG A:188BINDING SITE FOR RESIDUE SO4 A 436
07AC7SOFTWAREVAL A:213 , ARG A:215 , SO4 A:438BINDING SITE FOR RESIDUE SO4 A 437
08AC8SOFTWARELYS A:156 , ARG A:215 , SO4 A:437BINDING SITE FOR RESIDUE SO4 A 438
09AC9SOFTWARELYS A:393 , ARG A:397BINDING SITE FOR RESIDUE SO4 A 439
10BC1SOFTWAREARG A:7 , TYR A:386 , ALA A:427 , HOH A:612BINDING SITE FOR RESIDUE SO4 A 440
11BC2SOFTWAREGLN A:201BINDING SITE FOR RESIDUE SO4 A 441

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3R38)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1His A:299 -Pro A:300
2Gly A:356 -Pro A:357

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3R38)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3R38)

(-) Exons   (0, 0)

(no "Exon" information available for 3R38)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:438
 aligned with MURA1_LISMO | Q8Y4C4 from UniProtKB/Swiss-Prot  Length:430

    Alignment length:440
                                      1                                                                                                                                                                                                                                                                                                                                                                                                                                             
                                     -|       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430
          MURA1_LISMO     - ----------MEKIIVRGGKQLNGSVKMEGAKNAVLPVIAATLLASKGTSVLKNVPNLSDVFTINEVLKYLNADVSFVNDEVTVDATGEITSDAPFEYVRKMRASIVVMGPLLARTGSARVALPGGCAIGSRPVDLHLKGFEAMGAVVKIENGYIEATAEKLVGAKVYLDFPSVGATQNIMMAATLAEGTTVIENVAREPEIVDLANFLNQMGARVIGAGTEVIRIEGVKELTATEHSIIPDRIEAGTFMIAAAITGGNVLIEDAVPEHISSLIAKLEEMGVQIIEEENGIRVIGPDKLKAVDVKTMPHPGFPTDMQSQMMVIQMLSEGTSIMTETVFENRFMHVEEMRRMNADMKIEGHSVIISGPAKLQGAEVAATDLRAAAALILAGLVADGYTQVTELKYLDRGYNNFHGKLQALGADVERVDDSKVDVTNLASLF 430
               SCOP domains d3r38a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------EPSP_synthase-3r38A01 A:6-406                                                                                                                                                                                                                                                                                                                                                                                    ------------------------ Pfam domains
         Sec.struct. author ............eeeee.....eeeee...hhhhhhhhhhhh..eee..eeee....hhhhhhhhhhhhhh..eeeee..eeeee.......ee.hhhhhhhhhhhhhhhhhhhhhheeeee...........hhhhhhhhhhh..eeeee..eeeee.......eee....hhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhh...ee.....eeeee....ee..eee...hhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh..eee..--.eeee.........ee.......hhhhhhhhhhhhhhh..eeeee.........hhhhhhhh...eeee..eeeee........eee..hhhhhhhhhhhhhhh..eeeee.hhhhhh...hhhhhhhhh..eeeee.....hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r38 A  -9 TENLYFQSNAMEKIIVRGGKQLNGSVKMEGAKNAVLPVIAATLLASKGTSVLKNVPNLSDVFTINEVLKYLNADVSFVNDEVTVDATGEITSDAPFEYVRKMRASIVVMGPLLARTGSARVALPGGCAIGSRPVDLHLKGFEAMGAVVKIENGYIEATAEKLVGAKVYLDFPSVGATQNIMMAATLAEGTTVIENVAREPEIVDLANFLNQMGARVIGAGTEVIRIEGVKELTATEHSIIPDRIEAGTFMIAAAITGGNVLIEDAVPEHISSLIAKLEEMGVQIIEE--GIRVIGPDKLKAVDVKTMPHPGFPTDMQSQMMVIQMLSEGTSIMTETVFENRFMHVEEMRRMNADMKIEGHSVIISGPAKLQGAEVAATDLRAAAALILAGLVADGYTQVTELKYLDRGYNNFHGKLQALGADVERVDDSKVDVTNLASLF 430
                                     0        10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270      |280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430
                                                                                                                                                                                                                                                                                                                        277  |                                                                                                                                                      
                                                                                                                                                                                                                                                                                                                           280                                                                                                                                                      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3R38)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: EPT_RTPC (43)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A   (MURA1_LISMO | Q8Y4C4)
molecular function
    GO:0008760    UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity    Catalysis of the reaction: phosphoenolpyruvate + UDP-N-acetyl-alpha-D-glucosamine = phosphate + UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016765    transferase activity, transferring alkyl or aryl (other than methyl) groups    Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor).
biological process
    GO:0019277    UDP-N-acetylgalactosamine biosynthetic process    The chemical reactions and pathways resulting in the formation of UDP-N-acetylgalactosamine, a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0071555    cell wall organization    A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
    GO:0009252    peptidoglycan biosynthetic process    The chemical reactions and pathways resulting in the formation of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls.
    GO:0008360    regulation of cell shape    Any process that modulates the surface configuration of a cell.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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