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(-) Description

Title :  CRYSTAL STRUCTURE OF ENOLASE SUPERFAMILY MEMBER FROM VIBRIONALES BACTERIUM COMPLEXED WITH MG AND GLYCEROL IN THE ACTIVE SITE
 
Authors :  A. A. Fedorov, E. V. Fedorov, D. Wichelecki, J. A. Gerlt, S. C. Almo
Date :  13 Mar 11  (Deposition) - 14 Mar 12  (Release) - 14 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  B,D,E,G  (1x)
Biol. Unit 6:  A,C,F,H  (1x)
Biol. Unit 7:  A,B,C,D,E,F,G,H  (1x)
Keywords :  Enolase Fold, Dehydratase, Mg, Acid Sugar, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Fedorov, E. V. Fedorov, D. Wichelecki, J. A. Gerlt, S. C. Almo
Crystal Structure Of Enolase Superfamily Member From Vibrionales Bacterium Complexed With Mg And Glycerol In The Active Site
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MANDELATE RACEMASE / MUCONATE LACTONIZING ENZYME
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: VSWAT3_13707
    Organism Scientific: VIBRIONALES BACTERIUM SWAT-3
    Organism Taxid: 391574

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH
Biological Unit 5 (1x):  B DE G 
Biological Unit 6 (1x): A C  F H
Biological Unit 7 (1x): ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 18)

Asymmetric Unit (2, 18)
No.NameCountTypeFull Name
1GOL8Ligand/IonGLYCEROL
2MG10Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 5 (1, 4)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 6 (1, 4)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 7 (1, 8)
No.NameCountTypeFull Name
1GOL8Ligand/IonGLYCEROL
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:207 , GLU A:233 , GLU A:259 , HOH A:405 , HOH A:406 , HOH A:408BINDING SITE FOR RESIDUE MG A 402
02AC2SOFTWAREASP B:207 , GLU B:233 , GLU B:259 , HOH B:407 , HOH B:408 , HOH B:1802BINDING SITE FOR RESIDUE MG B 402
03AC3SOFTWAREASP C:207 , GLU C:233 , GLU C:259 , HOH C:404 , HOH C:405 , HOH C:407BINDING SITE FOR RESIDUE MG C 402
04AC4SOFTWAREASP D:207 , GLU D:233 , GLU D:259 , HOH D:405 , HOH D:406 , HOH D:408BINDING SITE FOR RESIDUE MG D 402
05AC5SOFTWAREASP E:207 , GLU E:233 , GLU E:259 , HOH E:405 , HOH E:407 , HOH E:410BINDING SITE FOR RESIDUE MG E 402
06AC6SOFTWAREASP F:207 , GLU F:233 , GLU F:259 , HOH F:404 , HOH F:405 , HOH F:407BINDING SITE FOR RESIDUE MG F 402
07AC7SOFTWAREASP G:207 , GLU G:233 , GLU G:259 , HOH G:404 , HOH G:405 , HOH G:1804BINDING SITE FOR RESIDUE MG G 402
08AC8SOFTWAREASP H:207 , GLU H:233 , GLU H:259 , HOH H:405 , HOH H:406 , HOH H:408BINDING SITE FOR RESIDUE MG H 402
09AC9SOFTWARELYS B:346 , HOH B:1473 , HOH B:1542 , HOH E:638BINDING SITE FOR RESIDUE MG B 403
10BC1SOFTWARELYS D:346 , HOH D:756 , HOH D:1632 , HOH D:1874 , HOH G:1429 , HOH G:1854BINDING SITE FOR RESIDUE MG D 403
11BC2SOFTWAREGLN A:43 , GLN A:44 , HIS A:209 , HIS A:309 , PRO A:311 , ASP A:313 , HOH A:404 , TYR B:81 , TRP B:82BINDING SITE FOR RESIDUE GOL A 403
12BC3SOFTWARETYR A:81 , TRP A:82 , GLN B:43 , GLN B:44 , HIS B:209 , GLU B:259 , HIS B:309 , PRO B:311 , ASP B:313BINDING SITE FOR RESIDUE GOL B 404
13BC4SOFTWAREGLN C:43 , GLN C:44 , HIS C:209 , GLU C:259 , HIS C:309 , PRO C:311 , ASP C:313 , TYR D:81 , TRP D:82BINDING SITE FOR RESIDUE GOL C 403
14BC5SOFTWARETYR C:81 , TRP C:82 , GLN D:43 , GLN D:44 , HIS D:209 , GLU D:259 , HIS D:309 , PRO D:311 , ASP D:313 , HOH D:1178BINDING SITE FOR RESIDUE GOL D 404
15BC6SOFTWAREGLN E:43 , GLN E:44 , HIS E:209 , HIS E:309 , PRO E:311 , ASP E:313 , TYR F:81 , TRP F:82BINDING SITE FOR RESIDUE GOL E 403
16BC7SOFTWARETYR E:81 , TRP E:82 , GLN F:43 , GLN F:44 , HIS F:209 , HIS F:309 , PRO F:311 , ASP F:313BINDING SITE FOR RESIDUE GOL F 403
17BC8SOFTWAREGLN G:43 , GLN G:44 , HIS G:209 , HIS G:309 , PRO G:311 , ASP G:313 , TYR H:81 , TRP H:82BINDING SITE FOR RESIDUE GOL G 403
18BC9SOFTWARETYR G:81 , TRP G:82 , GLN H:43 , GLN H:44 , HIS H:209 , HIS H:309 , PRO H:311 , ASP H:313 , HOH H:405BINDING SITE FOR RESIDUE GOL H 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3R25)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3R25)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3R25)

(-) PROSITE Motifs  (1, 8)

Asymmetric Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MR_MLE_1PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1.IMAND_VIBBS89-114
 
 
 
 
 
 
 		  8A:91-116
B:91-116
C:91-116
D:91-116
E:91-116
F:91-116
G:91-116
H:91-116
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MR_MLE_1PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1.IMAND_VIBBS89-114
 
 
 
 
 
 
 		  2A:91-116
B:91-116
-
-
-
-
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MR_MLE_1PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1.IMAND_VIBBS89-114
 
 
 
 
 
 
 		  2-
-
C:91-116
D:91-116
-
-
-
-
Biological Unit 3 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MR_MLE_1PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1.IMAND_VIBBS89-114
 
 
 
 
 
 
 		  2-
-
-
-
E:91-116
F:91-116
-
-
Biological Unit 4 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MR_MLE_1PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1.IMAND_VIBBS89-114
 
 
 
 
 
 
 		  2-
-
-
-
-
-
G:91-116
H:91-116
Biological Unit 5 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MR_MLE_1PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1.IMAND_VIBBS89-114
 
 
 
 
 
 
 		  4-
B:91-116
-
D:91-116
E:91-116
-
G:91-116
-
Biological Unit 6 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MR_MLE_1PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1.IMAND_VIBBS89-114
 
 
 
 
 
 
 		  4A:91-116
-
C:91-116
-
-
F:91-116
-
H:91-116
Biological Unit 7 (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MR_MLE_1PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1.IMAND_VIBBS89-114
 
 
 
 
 
 
 		  8A:91-116
B:91-116
C:91-116
D:91-116
E:91-116
F:91-116
G:91-116
H:91-116

(-) Exons   (0, 0)

(no "Exon" information available for 3R25)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:390
 aligned with IMAND_VIBBS | A5KUH4 from UniProtKB/Swiss-Prot  Length:399

    Alignment length:399
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390         
          IMAND_VIBBS     1 MKETIISDIHCIITKPDRHNLITVVVETNEGVTGFGCATFQQRPLAVKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAAAEFPVMYRPHEWTQSRLPDGAIHTP 399
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee......eeeeeeee.....eeee.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh......eeeeeeee..hhhhhhhhhhhhhhhh..eeeee.---------..........ee.hhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhh.....eee.....hhhhhhhhhhh....ee..hhhhh.hhhhhhhhhhhhhhh..ee........hhhhhhhhhhhhhhh.....ee....hhhhhhhh.........ee............hhhhhh........hhhh.ee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------MR_MLE_1  PDB: A:91-116   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r25 A   3 LKETIISDIHCIITKPDRHNLITVVVETNEGVTGFGCATFQQRPLAVKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQL---------LHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAAAEFPVMYRPHEWTQSRLPDGAIHTP 401
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152   |     -   |   172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392         
                                                                                                                                                                                   156       166                                                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:399
 aligned with IMAND_VIBBS | A5KUH4 from UniProtKB/Swiss-Prot  Length:399

    Alignment length:399
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390         
          IMAND_VIBBS     1 MKETIISDIHCIITKPDRHNLITVVVETNEGVTGFGCATFQQRPLAVKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAAAEFPVMYRPHEWTQSRLPDGAIHTP 399
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee......eeeeeeee.....eeee.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh......eeeeeeeee.hhhhhhhhhhhhhhh...eeeeee.hhhhh.............ee.hhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhhhh...eee......hhhhhhhhhh....ee..hhhhh.hhhhhhhhhhhhhhhh.ee........hhhhhhhhhhhhhhh.....ee....hhhhhhhh.........ee............hhhhhh........hhhh.ee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------MR_MLE_1  PDB: B:91-116   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r25 B   3 LKETIISDIHCIITKPDRHNLITVVVETNEGVTGFGCATFQQRPLAVKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAAAEFPVMYRPHEWTQSRLPDGAIHTP 401
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392         


Chain C from PDB  Type:PROTEIN  Length:390
 aligned with IMAND_VIBBS | A5KUH4 from UniProtKB/Swiss-Prot  Length:399

    Alignment length:399
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390         
          IMAND_VIBBS     1 MKETIISDIHCIITKPDRHNLITVVVETNEGVTGFGCATFQQRPLAVKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAAAEFPVMYRPHEWTQSRLPDGAIHTP 399
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee......eeeeeeee.....eeee.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh......eeeeeeee..hhhhhhhhhhhhhhh...eeeee.---------..........ee.hhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhh....eee...hhhhhhhhhhhhh.....eee.....hhhhhhhhhhh....ee..hhhhh.hhhhhhhhhhhhhhhh.ee........hhhhhhhhhhhhhhh.....ee....hhhhhhhh.........ee............hhhhhhh.......hhhh.ee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------MR_MLE_1  PDB: C:91-116   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r25 C   3 LKETIISDIHCIITKPDRHNLITVVVETNEGVTGFGCATFQQRPLAVKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQL---------LHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAAAEFPVMYRPHEWTQSRLPDGAIHTP 401
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152   |     -   |   172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392         
                                                                                                                                                                                   156       166                                                                                                                                                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:399
 aligned with IMAND_VIBBS | A5KUH4 from UniProtKB/Swiss-Prot  Length:399

    Alignment length:399
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390         
          IMAND_VIBBS     1 MKETIISDIHCIITKPDRHNLITVVVETNEGVTGFGCATFQQRPLAVKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAAAEFPVMYRPHEWTQSRLPDGAIHTP 399
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee......eeeeeeee.....eeee.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.......eeeeeeeee.hhhhhhhhhhhhhhh...eeeeee.hhhhh.............ee.hhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhh.....eee.....hhhhhhhhhhh....ee..hhhhhhhhhhhhhhhhhhhhhh.ee........hhhhhhhhhhhhhhh.....ee....hhhhhhhh.........ee............hhhhhhh.......hhhh.ee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------MR_MLE_1  PDB: D:91-116   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r25 D   3 LKETIISDIHCIITKPDRHNLITVVVETNEGVTGFGCATFQQRPLAVKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAAAEFPVMYRPHEWTQSRLPDGAIHTP 401
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392         


Chain E from PDB  Type:PROTEIN  Length:395
 aligned with IMAND_VIBBS | A5KUH4 from UniProtKB/Swiss-Prot  Length:399

    Alignment length:400
                             1                                                                                                                                                                                                                                                                                                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399
          IMAND_VIBBS     - -MKETIISDIHCIITKPDRHNLITVVVETNEGVTGFGCATFQQRPLAVKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAAAEFPVMYRPHEWTQSRLPDGAIHTP 399
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeee......eeeeeeee.....eeee.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh......eeeeeeeee.hhhhhhhhhhhhhhh...eeeeee...-----...........ee.hhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhh.....eee......hhhhhhhhhh....ee..hhhhhhhhhhhhhhhhhhhhhh.ee........hhhhhhhhhhhhhhh.....ee....hhhhhhhh.........ee............hhhhhh........hhhh.ee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------MR_MLE_1  PDB: E:91-116   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r25 E   2 SLKETIISDIHCIITKPDRHNLITVVVETNEGVTGFGCATFQQRPLAVKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFY-----DLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAAAEFPVMYRPHEWTQSRLPDGAIHTP 401
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       | -   |   171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401
                                                                                                                                                                                       159   165                                                                                                                                                                                                                                            


Chain F from PDB  Type:PROTEIN  Length:399
 aligned with IMAND_VIBBS | A5KUH4 from UniProtKB/Swiss-Prot  Length:399

    Alignment length:399
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390         
          IMAND_VIBBS     1 MKETIISDIHCIITKPDRHNLITVVVETNEGVTGFGCATFQQRPLAVKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAAAEFPVMYRPHEWTQSRLPDGAIHTP 399
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee......eeeeeeee....eeeee.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh......eeeeeeeee.hhhhhhhhhhhhhhh...eeeeee.hhhhh.............ee.hhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhh....eee...hhhhhhhhhhhhhhh...eee.....hhhhhhhhhhh....ee..hhhhhhhhhhhhhhhhhhhhhh.ee........hhhhhhhhhhhhhhh.....ee....hhhhhhhh.........ee............hhhhhhh.......hhhh.ee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------MR_MLE_1  PDB: F:91-116   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r25 F   3 LKETIISDIHCIITKPDRHNLITVVVETNEGVTGFGCATFQQRPLAVKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAAAEFPVMYRPHEWTQSRLPDGAIHTP 401
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392         


Chain G from PDB  Type:PROTEIN  Length:395
 aligned with IMAND_VIBBS | A5KUH4 from UniProtKB/Swiss-Prot  Length:399

    Alignment length:399
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390         
          IMAND_VIBBS     1 MKETIISDIHCIITKPDRHNLITVVVETNEGVTGFGCATFQQRPLAVKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAAAEFPVMYRPHEWTQSRLPDGAIHTP 399
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee......eeeeeeee.....eeee.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh......eeeeeeeee.hhhhhhhhhhhhhhh...eeeeee...----............ee.hhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhh....eee......hhhhhhhhhh.....eee.....hhhhhhhhhhh....ee..hhhhhhhhhhhhhhhhhhhhhh.ee........hhhhhhhhhhhhhhh.....ee....hhhhhhhh.........ee............hhhhhh........hhhh.ee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------MR_MLE_1  PDB: G:91-116   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r25 G   3 LKETIISDIHCIITKPDRHNLITVVVETNEGVTGFGCATFQQRPLAVKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFY----TDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAAAEFPVMYRPHEWTQSRLPDGAIHTP 401
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152      |  - |     172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392         
                                                                                                                                                                                      159  164                                                                                                                                                                                                                                             


Chain H from PDB  Type:PROTEIN  Length:395
 aligned with IMAND_VIBBS | A5KUH4 from UniProtKB/Swiss-Prot  Length:399

    Alignment length:399
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390         
          IMAND_VIBBS     1 MKETIISDIHCIITKPDRHNLITVVVETNEGVTGFGCATFQQRPLAVKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAAAEFPVMYRPHEWTQSRLPDGAIHTP 399
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee......eeeeeeee....eeeee.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.......eeeeeeeee.hhhhhhhhhhhhhhh...eeeeee.....----..........ee.hhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhh....eee......hhhhhhhhhh.....eee.....hhhhhhhhhhh....ee..hhhhhhhhhhhhhhhhhhhhh..ee........hhhhhhhhhhhhhhh.....ee....hhhhhhhh.........ee............hhhhhh........hhhh.ee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------MR_MLE_1  PDB: H:91-116   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r25 H   3 LKETIISDIHCIITKPDRHNLITVVVETNEGVTGFGCATFQQRPLAVKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGG----LHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAAAEFPVMYRPHEWTQSRLPDGAIHTP 401
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152        |-   |   172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392         
                                                                                                                                                                                        161  166
   Legend:   → Mismatch (orange background)
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(no "SCOP Domain" information available for 3R25)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3R25)

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(no "Pfam Domain" information available for 3R25)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (IMAND_VIBBS | A5KUH4)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0009063    cellular amino acid catabolic process    The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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  3r25
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IMAND_VIBBS | A5KUH4: 3dfh 3sbf

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3R25)