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(-) Description

Title :  STRUCTURE OF REMUSATIA VIVIPARA LECTIN
 
Authors :  K. N. Shetty, G. G. Bhat, B. M. Swamy, K. Suguna
Date :  07 Mar 11  (Deposition) - 10 Aug 11  (Release) - 19 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Carbohydrate Binding, Carbohydrate, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. N. Shetty, G. G. Bhat, S. R. Inamdar, B. M. Swamy, K. Suguna
Crystal Structure Of A {Beta}-Prism Ii Lectin From Remusati Vivipara.
Glycobiology V. 22 56 2012
PubMed-ID: 21788359  |  Reference-DOI: 10.1093/GLYCOB/CWR100

(-) Compounds

Molecule 1 - LECTIN
    Chains: A, C
    Fragment: UNP RESIDUES 25-132
    Organ: TUBER
    Organism Scientific: REMUSATIA VIVIPARA
    Organism Taxid: 189456
    Synonym: BETA PRISM II LECTIN
 
Molecule 2 - LECTIN
    Chains: B, D
    Fragment: UNP RESIDUES 140-249
    Organ: TUBER
    Organism Scientific: REMUSATIA VIVIPARA
    Organism Taxid: 189456
    Synonym: BETA PRISM II LECTIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3R0E)

(-) Sites  (0, 0)

(no "Site" information available for 3R0E)

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:31 -A:51
2B:34 -B:56
3C:31 -C:51
4D:34 -D:56

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gly A:97 -Pro A:98
2Gly B:102 -Pro B:103
3Gly C:97 -Pro C:98
4Gly D:102 -Pro D:103

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3R0E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3R0E)

(-) Exons   (0, 0)

(no "Exon" information available for 3R0E)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:109
 aligned with B5LYJ9_REMVI | B5LYJ9 from UniProtKB/TrEMBL  Length:256

    Alignment length:109
                                    33        43        53        63        73        83        93       103       113       123         
         B5LYJ9_REMVI    24 LGTNYLLSGQTLDTEGHLKNGDFDLVMQDDCNLVLYNGNWQSNTANNGRDCKLTLTDYGELVIKNGDGSTVWKSGAQSVKGNYAAVVHPDGRLVVLGPSVFKIDPWVRG 132
               SCOP domains d3r0ea_ A: automated matches                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee...ee....eeee..eeeee.....eeee...ee..........eeee.....eeee.....eeee..........eeeee...eeeee..eeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3r0e A   1 LGTNYLLSGQTLDTEGHLKNGDFDLVMQDDCNLVLYNGNWQSNTANNGRDCKLTLTDYGELVIKNGDGSTVWKSGAQSVKGNYAAVVHPDGRLVVFGPSVFKIDPWVRG 109
                                    10        20        30        40        50        60        70        80        90       100         


Chain B from PDB  Type:PROTEIN  Length:110
 aligned with B5LYJ9_REMVI | B5LYJ9 from UniProtKB/TrEMBL  Length:256

    Alignment length:110
                                   149       159       169       179       189       199       209       219       229       239       249
         B5LYJ9_REMVI   140 NIPFTNNLLFSGQVLYGDGRLTAKNHQLVMQGDCNLVLYGGKYGWQSNTHGNGEHCFLRLNHKGELIIKDDDFKTIWSSRSSSKQGEYVLILQDDGFGVIYGPAIFETSS 249
               SCOP domains d3r0eb_ B: automated matches                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee...eee..eeee....eeee.....eeee.....ee..........eeee.....eeee.....eeee..........eeee.....eeee..eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 3r0e B   1 NIPFTNNLLFSGQVLYGDGRLTAKNHQLVMQGDCNLVLYGGKYGWQSNTHGNGEHCFLRLNHKGELIIKDDDFKTIWSSRSSSKQGEYVLILQDDGFGVIYGPAIFETSS 110
                                    10        20        30        40        50        60        70        80        90       100       110


Chain C from PDB  Type:PROTEIN  Length:109
 aligned with B5LYJ9_REMVI | B5LYJ9 from UniProtKB/TrEMBL  Length:256

    Alignment length:109
                                    33        43        53        63        73        83        93       103       113       123         
         B5LYJ9_REMVI    24 LGTNYLLSGQTLDTEGHLKNGDFDLVMQDDCNLVLYNGNWQSNTANNGRDCKLTLTDYGELVIKNGDGSTVWKSGAQSVKGNYAAVVHPDGRLVVLGPSVFKIDPWVRG 132
               SCOP domains d3r0ec_ C: automated matches                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee...ee....eeee..eeeee.....eeee...ee..........eeee.....eeee.....eeee..........eeee.....eeee..eeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3r0e C   1 LGTNYLLSGQTLDTEGHLKNGDFDLVMQDDCNLVLYNGNWQSNTANNGRDCKLTLTDYGELVIKNGDGSTVWKSGAQSVKGNYAAVVHPDGRLVVFGPSVFKIDPWVRG 109
                                    10        20        30        40        50        60        70        80        90       100         


Chain D from PDB  Type:PROTEIN  Length:110
 aligned with B5LYJ9_REMVI | B5LYJ9 from UniProtKB/TrEMBL  Length:256

    Alignment length:110
                                   149       159       169       179       189       199       209       219       229       239       249
         B5LYJ9_REMVI   140 NIPFTNNLLFSGQVLYGDGRLTAKNHQLVMQGDCNLVLYGGKYGWQSNTHGNGEHCFLRLNHKGELIIKDDDFKTIWSSRSSSKQGEYVLILQDDGFGVIYGPAIFETSS 249
               SCOP domains d3r0ed_ D: automated matches                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee...eee...eee....eeee.....eeee.....ee..........eeee.....eeee.....eeee..........eeee.....eeee..eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 3r0e D   1 NIPFTNNLLFSGQVLYGDGRLTAKNHQLVMQGDCNLVLYGGKYGWQSNTHGNGEHCFLRLNHKGELIIKDDDFKTIWSSRSSSKQGEYVLILQDDGFGVIYGPAIFETSS 110
                                    10        20        30        40        50        60        70        80        90       100       110
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3R0E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3R0E)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3R0E)

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  Cis Peptide Bonds
    Gly A:97 - Pro A:98   [ RasMol ]  
    Gly B:102 - Pro B:103   [ RasMol ]  
    Gly C:97 - Pro C:98   [ RasMol ]  
    Gly D:102 - Pro D:103   [ RasMol ]  
 
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 Related Entries

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(-) Related Entries Specified in the PDB File

1dlp MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM DAFFODIL (NARCISSUS PSEUDONARCISSUS) BULBS IN COMPLEX WITH MANNOSE- ALPHA-1,3-MANNOSE
1kj1 MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM GARLIC (ALLIUM SATIVUM) BULBS COMPLEXED WITH ALPHA-D-MANNOSE
1msa MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM SNOWDROP (GALANTHUS NIVALIS) BULBS COMPLEXED WITH METHYL-ALPHA-D- MANNOSIDE