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(-) Description

Title :  CRYSTAL STRUCTURE OF NAD-BINDING PHOSPHOGLUCONATE DEHYDROGENASE-LIKE PROTEIN FROM ALICYCLOBACILLUS ACIDOCALDARIUS
 
Authors :  K. Michalska, R. Wu, J. Bearden, A. Joachimiak, Midwest Center For S Genomics (Mcsg)
Date :  21 Feb 11  (Deposition) - 13 Apr 11  (Release) - 13 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Rossmann-Fold Nad-Binding Proteins, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Michalska, R. Wu, J. Bearden, A. Joachimiak
Crystal Structure Of Nad-Binding Phosphogluconate Dehydrogenase-Like Protein From Alicyclobacillus Acidocaldarius
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NAD-BINDING PHOSPHOGLUCONATE DEHYDROGENASE-LIKE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 MAGIC
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: AACI_1610
    Organism Scientific: ALICYCLOBACILLUS ACIDOCALDARIUS SUBSP. ACIDOCALDARIUS
    Organism Taxid: 521098
    Strain: DSM 446

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric Unit (2, 7)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 10)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:247 , ARG A:257 , ARG A:260BINDING SITE FOR RESIDUE CL A 289
2AC2SOFTWAREALA A:124 , VAL A:125BINDING SITE FOR RESIDUE CL A 290

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3QSG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3QSG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:285
 aligned with C8WX00_ALIAD | C8WX00 from UniProtKB/TrEMBL  Length:288

    Alignment length:285
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
         C8WX00_ALIAD     1 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPHGHRVPLVVDGDGARRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLADRVLASLDASFPEHHLRDLALYLVERNLEHADRRAHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAALKQRPGDVRAWLRSLANA 285
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -F420_oxidored-3qsgA01 A:2-94                                                                 -----------------------------------------------------------------------------------------------DUF1932-3qsgA02 A:190-263                                                 ---------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh..ee..hhhhhhhhh.eeee.....hhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhhh...eeeeeee......hhhh.eeeee..hhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qsg A   1 mKLGFIGFGEAASAIASGLRQAGAIDmAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVmSAVKPHGHRVPLVVDGDGARRFQAAFTLYGCRIEVLDGEVGGAALLKmCRSAVLKGLEALFLEALAAAEKmGLADRVLASLDASFPEHHLRDLALYLVERNLEHADRRAHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAALKQRPGDVRAWLRSLANA 285
                            |       10        20      | 30        40        50        60        70        80        90       100       110       120 |     130       140       150       160       170       180       190  |    200       210       220       230       240       250       260       270       280     
                            |                        27-MSE                                                                                        122-MSE                                         170-MSE                193-MSE                                                                                        
                            1-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3QSG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QSG)

(-) Pfam Domains  (2, 2)

Asymmetric Unit
(-)
Clan: NADP_Rossmann (1239)
(-)
Clan: no clan defined [family: DUF1932] (1)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A   (C8WX00_ALIAD | C8WX00)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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