Chain A from PDB Type:PROTEIN Length:119
aligned with E2IPT4_9POLY | E2IPT4 from UniProtKB/TrEMBL Length:739
Alignment length:119
240 250 260 270 280 290 300 310 320 330 340
E2IPT4_9POLY 231 TPVPTDFPIDLSDYLSHAVYSNKTVSCFAIYTTSDKAIELYDKIEKFKVDFKSRHACELGCILLFITLSKHRVSAIKNFCSTFCTISFLICKGVNKMPEMYNNLCKPPYKLLQENKPLL 349
SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .......hhhhh............eeeeee..hhhhhhhhhhhhhhh.eeeeeeee....eeeeeeeeeeehhhhhhhhh..........eee..hhhhhhhhh......eeee..... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
3qfq A 309 TPVPTDFPIDLSDYLSHAVYSNKTVSCFAIYTTSDKAIELYDKIEKFKVDFKSRHACELGCILLFITLSKHRVSAIKNFCSTFCTISFLICKGVNKMPEMYNNLCKPPYKLLQENKPLL 427
318 328 338 348 358 368 378 388 398 408 418
Chain B from PDB Type:PROTEIN Length:120
aligned with E2IPT4_9POLY | E2IPT4 from UniProtKB/TrEMBL Length:739
Alignment length:120
240 250 260 270 280 290 300 310 320 330 340 350
E2IPT4_9POLY 231 TPVPTDFPIDLSDYLSHAVYSNKTVSCFAIYTTSDKAIELYDKIEKFKVDFKSRHACELGCILLFITLSKHRVSAIKNFCSTFCTISFLICKGVNKMPEMYNNLCKPPYKLLQENKPLLN 350
SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .......hhhhh............eeeeeeeehhhhhhhhhhhh....eeeeee......eeeeeeeeeeehhhhhhhhhhhhh.....eeee..hhhhhhhhh................ Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
3qfq B 309 TPVPTDFPIDLSDYLSHAVYSNKTVSCFAIYTTSDKAIELYDKIEKFKVDFKSRHACELGCILLFITLSKHRVSAIKNFCSTFCTISFLICKGVNKMPEMYNNLCKPPYKLLQENKPLLN 428
318 328 338 348 358 368 378 388 398 408 418 428
Chain C from PDB Type:DNA Length:26
3qfq C 1 CGGAGGCTAGGAGCCCCAAGCCTCTG 26
10 20
Chain E from PDB Type:PROTEIN Length:117
aligned with E2IPT4_9POLY | E2IPT4 from UniProtKB/TrEMBL Length:739
Alignment length:117
242 252 262 272 282 292 302 312 322 332 342
E2IPT4_9POLY 233 VPTDFPIDLSDYLSHAVYSNKTVSCFAIYTTSDKAIELYDKIEKFKVDFKSRHACELGCILLFITLSKHRVSAIKNFCSTFCTISFLICKGVNKMPEMYNNLCKPPYKLLQENKPLL 349
SCOP domains d3qfqe_ E: automated matches SCOP domains
CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) --T_Ag_DNA_bind-3qfqE01 E:313-405 ---------------------- Pfam domains (1)
Pfam domains (2) --T_Ag_DNA_bind-3qfqE02 E:313-405 ---------------------- Pfam domains (2)
Pfam domains (3) --T_Ag_DNA_bind-3qfqE03 E:313-405 ---------------------- Pfam domains (3)
Sec.struct. author .....hhhhh............eeeeeeeehhhhhhhhhhhhhhh.eeeeeee.....eeeeeeeeeeehhhhhhhhhh........eeee..hhhhhhhhh......eeeee.... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
3qfq E 311 VPTDFPIDLSDYLSHAVYSNKTVSCFAIYTTSDKAIELYDKIEKFKVDFKSRHACELGCILLFITLSKHRVSAIKNFCSTFCTISFLICKGVNKMPEMYNNLCKPPYKLLQENKPLL 427
320 330 340 350 360 370 380 390 400 410 420
Chain W from PDB Type:DNA Length:26
3qfq W 1 GCAGAGGCTTGGGGCTCCTAGCCTCC 26
10 20
Legend: |
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→ Mismatch |
(orange background) |
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→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |