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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF A MUCBP DOMAIN OF THE PROTEIN LBA1460 FROM LACTOBACILLUS ACIDOPHILUS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET LAR80A
 
Authors :  J. Seetharaman, S. Lew, F. Forouhar, D. Wang, C. Ciccosanti, S. Sahdev, B. Rost, T. B. Acton, R. Xiao, J. K. Everett, G. T. Montelione, L. Tong, J Northeast Structural Genomics Consortium (Nesg)
Date :  31 Dec 10  (Deposition) - 06 Apr 11  (Release) - 22 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Domain Family Pf06458, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Seetharaman, S. Lew, F. Forouhar, D. Wang, C. Ciccosanti, S. Sahdev R. Nair, B. Rost, T. B. Acton, R. Xiao, J. K. Everett, G. T. Montelione, L. Tong, J. F. Hunt
X-Ray Crystal Structure Of A Mucbp Domain Of The Protein Lba1460 From Lactobacillus Acidophilus, Northeast Structura Genomics Consortium Target Lar80A
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROBABLE ZN BINDING PROTEIN
    Chains: A
    Engineered: YES
    Gene: LBA1460
    Organism Scientific: LACTOBACILLUS ACIDOPHILUS
    Organism Taxid: 1579
    Synonym: PUTATIVE MUCUS BINDING PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3Q69)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3Q69)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:79 -Pro A:80

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3Q69)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3Q69)

(-) Exons   (0, 0)

(no "Exon" information available for 3Q69)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:105
 aligned with Q5FJ43_LACAC | Q5FJ43 from UniProtKB/TrEMBL  Length:339

    Alignment length:105
                                   190       200       210       220       230       240       250       260       270       280     
         Q5FJ43_LACAC   181 DIEPIKRTQVVTQTIHYRYEDGAVAHDDHVVSLIFTQSGKRDLTNGKEIWDSKWSLTQTFEALPSPVIIGYTADKPMVGPDEVTVDSKNFLDKQNREETVIYSAN 285
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------MucBP-3q69A01 A:7-105                                                                               Pfam domains (1)
           Pfam domains (2) ------MucBP-3q69A02 A:7-105                                                                               Pfam domains (2)
         Sec.struct. author .eeeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeeee.....ee.....eeeeee..ee......eee...ee..eeeeee.hhh.....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 3q69 A   1 mIEPIKRTQVVTQTIHYRYEDGAVAHDDHVVSLIFTQSGKRDLTNGKEIWDSKWSLTQTFEALPSPVIIGYTADKPmVGPDEVTVDSKNFLDKQNREETVIYSAN 105
                            |       10        20        30        40        50        60        70      | 80        90       100     
                            |                                                                          77-MSE                        
                            1-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3Q69)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3Q69)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: Gram-pos_anchor (4)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3Q69)

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  Cis Peptide Bonds
    Gly A:79 - Pro A:80   [ RasMol ]  
 

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  3q69
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5FJ43_LACAC | Q5FJ43: 2lfi

(-) Related Entries Specified in the PDB File

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