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(-) Description

Title :  THE CRYSTAL STRUCTURES OF PORCINE PATHOGEN ASH57_TBPB
 
Authors :  C. Calmettes, T. F. Moraes
Date :  26 Nov 10  (Deposition) - 02 Feb 11  (Release) - 20 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Lipoprotein, Transferrin Receptor, Iron Acquisition, Vaccine Candidate, Beta-Barrel, Transferrin Binding, Transferrin, Outermembrane, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Calmettes, R. H. Yu, L. P. Silva, D. Curran, D. C. Schriemer, A. B. Schryvers, T. F. Moraes
Structural Variations Within The Transferrin Binding Site O Transferrin-Binding Protein B, Tbpb.
J. Biol. Chem. V. 286 12683 2011
PubMed-ID: 21297163  |  Reference-DOI: 10.1074/JBC.M110.206102

(-) Compounds

Molecule 1 - TRANSFERRIN BINDING PROTEIN B
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TBPB
    Organism Scientific: ACTINOBACILLUS SUIS
    Organism Taxid: 716
    Strain: H57
    Synonym: TRANSFERRIN-BINDING PROTEIN B

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:124 , LYS A:332 , HOH A:890BINDING SITE FOR RESIDUE GOL A 3968
2AC2SOFTWAREILE A:87 , TRP A:88 , ASN A:89 , GOL A:579 , HOH A:618 , HOH A:803BINDING SITE FOR RESIDUE GOL A 578
3AC3SOFTWAREASN A:89 , GLU A:90 , GOL A:578 , HOH A:935BINDING SITE FOR RESIDUE GOL A 579
4AC4SOFTWAREASP B:42 , LYS B:43 , LEU B:44 , GLU B:81 , TYR B:301 , HOH B:831 , HOH B:904BINDING SITE FOR RESIDUE GOL B 3968
5AC5SOFTWAREARG B:60 , ASN B:154 , HOH B:727 , HOH B:801BINDING SITE FOR RESIDUE GOL B 578

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:400 -A:401
2B:400 -B:401

(-) Cis Peptide Bonds  (11, 11)

Asymmetric Unit
No.Residues
1Gly A:336 -Glu A:337
2Asn A:391 -Gly A:392
3Cys A:400 -Cys A:401
4Lys A:418 -Gln A:419
5Gly A:441 -Gly A:442
6Asp A:561 -Asn A:562
7Gly B:336 -Glu B:337
8Cys B:400 -Cys B:401
9Gly B:441 -Gly B:442
10Gly B:494 -Val B:495
11Asp B:561 -Asn B:562

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3PQU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3PQU)

(-) Exons   (0, 0)

(no "Exon" information available for 3PQU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:547
 aligned with Q83UA7_ACTSU | Q83UA7 from UniProtKB/TrEMBL  Length:596

    Alignment length:550
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595
         Q83UA7_ACTSU    46 SYQDEETKKKTKEELDKLMEPTLGVEAKIPRRNRALFDKEGNRKATPDTTDELSEAQIMAIWNENIDEIPHLKELNDKTTSGLIYHSHDGKQEDKKRNLQYVRSGYVFDESYSEIVKNKNGVPYIFKNGIDGYIYYLGTSPSKELPKGNKVTYKGTWDFTSDVKTSYELSGFSDAGNGKNVAATSISDNVNRDHKVGEKLGDNEVKGVAHSSEFAVDFDNKKLTGSLYRNGYINRNKAQEVTKRYSIEADITGNRFRGKAKAEKAGDPIFTDSNYLEGGFYGPKAEEMAGKFFTNNKSLFAVFAAKSENGETTTERIIDATKIDLTQFNAKELNNFGDASVLIIDGQKIDLAGVNFKNSKTVEINGKTMVAVACCSNLEYMKFGQLWQKEGKQQVKDNSLFLQGERTATDKMPAGGNYKYVGTWDALVSKGTNWIAEADNNRESGYRTEFDVNFSDKKVNGKLFDKGGVNPVFTVDATINGNGFIGSAKTSDSGFALDAGSSQHGNAVFSDIKVNGGFYGPTAGELGGQFHHKSDNGSVGAVFGAKRQIE 595
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...........hhhhh...eeeee.....................ee..hhhhheee.........hhhhhhhhh....eee.....hhhhh.....eeeeeeee....eeee.....eeeee...eeeeeeee.....eee....eeeeeeeeeee.ee..................................ee..ee.....eeeeeeee....eeeeeeeee..........eeeeeeeeeeee..eeeeeeee..........eeeeeeeee.....eeeeeee.....eeeeeeeee......eee.eeeeeee.....eee........eeee..eeee......eeeeeeee..eeeeeeee......eeeeeeeeee...eeeeeeeeeeee..hhhhh....eeeeeeeeeeeee...eeee...........eeeeee....eeeeee.........eeeeeeee..eeeeeee.........---..........eeeeeeee.....eeeeeeee.....eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pqu A  27 SYQDEETKKKTKEELDKLMEPTLGVEAKIPRRNRALFDKEGNRKATPDTTDELSEAQIMAIWNENIDEIPHLKELNDKTTSGLIYHSHDGKQEDKKRNLQYVRSGYVFDESYSEIVKNKNGVPYIFKNGIDGYIYYLGTSPSKELPKGNKVTYKGTWDFTSDVKTSYELSGFSDAGNGKNVAATSISDNVNRDHKVGEKLGDNEVKGVAHSSEFAVDFDNKKLTGSLYRNGYINRNKAQEVTKRYSIEADITGNRFRGKAKAEKAGDPIFTDSNYLEGGFYGPKAEEMAGKFFTNNKSLFAVFAAKSENGETTTERIIDATKIDLTQFNAKELNNFGDASVLIIDGQKIDLAGVNFKNSKTVEINGKTMVAVACCSNLEYMKFGQLWQKEGKQQVKDNSLFLQGERTATDKMPAGGNYKYVGTWDALVSKGTNWIAEADNNRESGYRTEFDVNFSDKKVNGKLFDKGGVNPVFTVDATINGNGFIGSAKTSDSGFALD---SQHGNAVFSDIKVNGGFYGPTAGELGGQFHHKSDNGSVGAVFGAKRQIE 576
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       | - |     536       546       556       566       576
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           524 528                                                


Chain B from PDB  Type:PROTEIN  Length:540
 aligned with Q83UA7_ACTSU | Q83UA7 from UniProtKB/TrEMBL  Length:596

    Alignment length:549
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585         
         Q83UA7_ACTSU    46 SYQDEETKKKTKEELDKLMEPTLGVEAKIPRRNRALFDKEGNRKATPDTTDELSEAQIMAIWNENIDEIPHLKELNDKTTSGLIYHSHDGKQEDKKRNLQYVRSGYVFDESYSEIVKNKNGVPYIFKNGIDGYIYYLGTSPSKELPKGNKVTYKGTWDFTSDVKTSYELSGFSDAGNGKNVAATSISDNVNRDHKVGEKLGDNEVKGVAHSSEFAVDFDNKKLTGSLYRNGYINRNKAQEVTKRYSIEADITGNRFRGKAKAEKAGDPIFTDSNYLEGGFYGPKAEEMAGKFFTNNKSLFAVFAAKSENGETTTERIIDATKIDLTQFNAKELNNFGDASVLIIDGQKIDLAGVNFKNSKTVEINGKTMVAVACCSNLEYMKFGQLWQKEGKQQVKDNSLFLQGERTATDKMPAGGNYKYVGTWDALVSKGTNWIAEADNNRESGYRTEFDVNFSDKKVNGKLFDKGGVNPVFTVDATINGNGFIGSAKTSDSGFALDAGSSQHGNAVFSDIKVNGGFYGPTAGELGGQFHHKSDNGSVGAVFGAKRQI 594
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Lipoprotein_5-3pquB01 B:27-574                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      - Pfam domains (1)
           Pfam domains (2) Lipoprotein_5-3pquB02 B:27-574                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      - Pfam domains (2)
         Sec.struct. author ...............hhhhh...eeeee.....................ee..hhh.eeee.........hhhhhhhhh....eee.....hhhhh.....eeeeeeee....eeee.....eeeee...eeeeeeee.....eee....eeeeeeeeeee.ee..................................ee..ee.....eeeeeeee....eeeeeeeee..........eeeeeeeeeeee..eeeeeeee..........eeeeeeeee.....eeeeeee.....eeeeeeeee......eee.eeeeeee.....eee........eeee..eeee......eeeeeeee..eeeeeeee......eeeeeeeee.---..eeeeeeeeee..hhhhh....eeeeeeeeeeeee...eeee...........eeeeee....eeeeee.........eeeeeeee..eeeeeee.........------.......eeeeeeee.....eeeeeeee.....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pqu B  27 SYQDEETKKKTKEELDKLMEPTLGVEAKIPRRNRALFDKEGNRKATPDTTDELSEAQIMAIWNENIDEIPHLKELNDKTTSGLIYHSHDGKQEDKKRNLQYVRSGYVFDESYSEIVKNKNGVPYIFKNGIDGYIYYLGTSPSKELPKGNKVTYKGTWDFTSDVKTSYELSGFSDAGNGKNVAATSISDNVNRDHKVGEKLGDNEVKGVAHSSEFAVDFDNKKLTGSLYRNGYINRNKAQEVTKRYSIEADITGNRFRGKAKAEKAGDPIFTDSNYLEGGFYGPKAEEMAGKFFTNNKSLFAVFAAKSENGETTTERIIDATKIDLTQFNAKELNNFGDASVLIIDGQKIDLAGVNFKNSKTVEINGKTMVAVACCSNLEYMKFGQLWQKE---QVKDNSLFLQGERTATDKMPAGGNYKYVGTWDALVSKGTNWIAEADNNRESGYRTEFDVNFSDKKVNGKLFDKGGVNPVFTVDATINGNGFIGSAKTSDSGFALD------GNAVFSDIKVNGGFYGPTAGELGGQFHHKSDNGSVGAVFGAKRQI 575
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416   |   426       436       446       456       466       476       486       496       506       516       | -    |  536       546       556       566         
                                                                                                                                                                                                                                                                                                                                                                                                                               416 420                                                                                                     524    531
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3PQU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3PQU)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: Lipoprotein_5] (2)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q83UA7_ACTSU | Q83UA7)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        Q83UA7_ACTSU | Q83UA7: 4o3w

(-) Related Entries Specified in the PDB File

3pqs