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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE SULFURTRANSFERASE DSRE (SWOL_2425) FROM SYNTROPHOMONAS WOLFEI STR. GOETTINGEN AT 1.92 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  19 Nov 10  (Deposition) - 15 Dec 10  (Release) - 20 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.92
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Sulfurtransferase Dsre (Swol_2425) From Syntrophomonas Wolfei Str. Goettingen At 1. 92 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE SULFURTRANSFERASE DSRE
    ChainsA, B, C, D, E, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidSPEEDET
    Expression System StrainHK100
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneSWOL_2425
    Organism ScientificSYNTROPHOMONAS WOLFEI
    Organism Taxid335541
    StrainGOETTINGEN

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)ABC   
Biological Unit 2 (1x)   DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 72)

Asymmetric Unit (5, 72)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2GOL4Ligand/IonGLYCEROL
3MSE50Mod. Amino AcidSELENOMETHIONINE
4NA10Ligand/IonSODIUM ION
5OCS6Mod. Amino AcidCYSTEINESULFONIC ACID
Biological Unit 1 (3, 30)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
3MSE25Mod. Amino AcidSELENOMETHIONINE
4NA-1Ligand/IonSODIUM ION
5OCS3Mod. Amino AcidCYSTEINESULFONIC ACID
Biological Unit 2 (3, 30)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
3MSE25Mod. Amino AcidSELENOMETHIONINE
4NA-1Ligand/IonSODIUM ION
5OCS3Mod. Amino AcidCYSTEINESULFONIC ACID

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:158 , NA A:170 , PHE B:158 , PHE C:158BINDING SITE FOR RESIDUE CL A 161
02AC2SOFTWAREGLU A:62 , GLU A:125 , ILE A:126 , GLU C:98 , HOH C:187BINDING SITE FOR RESIDUE NA A 164
03AC3SOFTWAREGLN A:156 , GLN B:156 , GLN C:156BINDING SITE FOR RESIDUE NA A 166
04AC4SOFTWAREPHE A:158 , CL A:161 , PHE B:158 , GOL B:172 , PHE C:158BINDING SITE FOR RESIDUE NA A 170
05AC5SOFTWAREGLY A:0 , GLU A:2 , ASN A:3 , ASN C:26 , ASP C:105 , GLY C:109 , LYS C:113BINDING SITE FOR RESIDUE GOL A 175
06AC6SOFTWAREGLU A:98 , HOH A:289 , GLU B:62 , GLU B:125 , ILE B:126BINDING SITE FOR RESIDUE NA B 162
07AC7SOFTWARELYS A:17 , PHE A:158 , ILE A:159 , NA A:170 , LYS B:17 , PHE B:158 , ILE B:159 , LYS C:17 , PHE C:158 , ILE C:159BINDING SITE FOR RESIDUE GOL B 172
08AC8SOFTWAREGLU B:98 , HOH B:277 , GLU C:62 , GLU C:125 , ILE C:126BINDING SITE FOR RESIDUE NA C 169
09AC9SOFTWAREPHE D:158 , NA D:171 , PHE E:158 , PHE F:158BINDING SITE FOR RESIDUE CL D 160
10BC1SOFTWAREGLU D:62 , GLU D:125 , ILE D:126 , GLU E:98 , HOH E:337BINDING SITE FOR RESIDUE NA D 165
11BC2SOFTWAREGLN D:156 , GLN E:156 , GLN F:156BINDING SITE FOR RESIDUE NA D 167
12BC3SOFTWAREPHE D:158 , CL D:160 , GOL D:173 , PHE E:158 , PHE F:158BINDING SITE FOR RESIDUE NA D 171
13BC4SOFTWARELYS D:17 , PHE D:158 , ILE D:159 , NA D:171 , LYS E:17 , PHE E:158 , ILE E:159 , LYS F:17 , PHE F:158 , ILE F:159BINDING SITE FOR RESIDUE GOL D 173
14BC5SOFTWAREGLY D:13 , LEU D:45 , PRO D:70 , PRO D:77 , LYS E:80BINDING SITE FOR RESIDUE GOL D 174
15BC6SOFTWAREGLU E:62 , GLU E:125 , ILE E:126 , GLU F:98 , HOH F:231BINDING SITE FOR RESIDUE NA E 168
16BC7SOFTWAREGLU D:98 , HOH D:338 , GLU F:62 , GLU F:125 , ILE F:126BINDING SITE FOR RESIDUE NA F 163

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3PNX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3PNX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3PNX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3PNX)

(-) Exons   (0, 0)

(no "Exon" information available for 3PNX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:160
 aligned with Q0AU90_SYNWW | Q0AU90 from UniProtKB/TrEMBL  Length:159

    Alignment length:160
                             1                                                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159
         Q0AU90_SYNWW     - -MENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYACQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI 159
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee...hhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh.....hhhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhh..eeeeehhhhhhhh.hhhhh....eeehhhhhhhhhhhh.eeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pnx A   0 GmENKKmNLLLFSGDYDKALASLIIANAAREmEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKmNLGGIGKKmLLEmmKEEKAPKLSDLLSGARKKEVKFYAcQLSVEImGFKKEELFPEVQImDVKEYLKNALESDLQLFI 159
                             |    |  9        19        29 |      39        49        59        69        79 |      89|   ||  99       109       119|      129       139 |     149       159
                             |    |                       31-MSE                                            81-MSE   90-MSE|                      120-OCS  |           141-MSE              
                             1-MSE|                                                                                      94-MSE                          127-MSE                            
                                  6-MSE                                                                                   95-MSE                                                            

Chain B from PDB  Type:PROTEIN  Length:157
 aligned with Q0AU90_SYNWW | Q0AU90 from UniProtKB/TrEMBL  Length:159

    Alignment length:157
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       
         Q0AU90_SYNWW     3 NKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYACQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI 159
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh.....hhhhhhhhhh...hhhhh........hhhhhhhhhhhhhhh..hhhhhhhhhhhh..eeeeehhhhhhhh.hhhhh....eeehhhhhhhhhhh..eeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pnx B   3 NKKmNLLLFSGDYDKALASLIIANAAREmEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKmNLGGIGKKmLLEmmKEEKAPKLSDLLSGARKKEVKFYAcQLSVEImGFKKEELFPEVQImDVKEYLKNALESDLQLFI 159
                               |    12        22        32        42        52        62        72        82       |92 ||    102       112       122    |  132       142       152       
                               6-MSE                   31-MSE                                            81-MSE   90-MSE|                      120-OCS  |           141-MSE              
                                                                                                                      94-MSE                          127-MSE                            
                                                                                                                       95-MSE                                                            

Chain C from PDB  Type:PROTEIN  Length:157
 aligned with Q0AU90_SYNWW | Q0AU90 from UniProtKB/TrEMBL  Length:159

    Alignment length:157
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       
         Q0AU90_SYNWW     3 NKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYACQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI 159
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhh..........hhhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhh..eeeeehhhhhhhh.hhhhh....eeehhhhhhhhhhh..eeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pnx C   3 NKKmNLLLFSGDYDKALASLIIANAAREmEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKmNLGGIGKKmLLEmmKEEKAPKLSDLLSGARKKEVKFYAcQLSVEImGFKKEELFPEVQImDVKEYLKNALESDLQLFI 159
                               |    12        22        32        42        52        62        72        82       |92 ||    102       112       122    |  132       142       152       
                               6-MSE                   31-MSE                                            81-MSE   90-MSE|                      120-OCS  |           141-MSE              
                                                                                                                      94-MSE                          127-MSE                            
                                                                                                                       95-MSE                                                            

Chain D from PDB  Type:PROTEIN  Length:160
 aligned with Q0AU90_SYNWW | Q0AU90 from UniProtKB/TrEMBL  Length:159

    Alignment length:160
                             1                                                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159
         Q0AU90_SYNWW     - -MENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYACQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI 159
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee...hhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh.....hhhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhh..eeeeehhhhhhhh.hhhhh....eeehhhhhhhhhhhh.eeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pnx D   0 GmENKKmNLLLFSGDYDKALASLIIANAAREmEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKmNLGGIGKKmLLEmmKEEKAPKLSDLLSGARKKEVKFYAcQLSVEImGFKKEELFPEVQImDVKEYLKNALESDLQLFI 159
                             |    |  9        19        29 |      39        49        59        69        79 |      89|   ||  99       109       119|      129       139 |     149       159
                             1-MSE|                       31-MSE                                            81-MSE   90-MSE|                      120-OCS  |           141-MSE              
                                  6-MSE                                                                                  94-MSE                          127-MSE                            
                                                                                                                          95-MSE                                                            

Chain E from PDB  Type:PROTEIN  Length:157
 aligned with Q0AU90_SYNWW | Q0AU90 from UniProtKB/TrEMBL  Length:159

    Alignment length:157
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       
         Q0AU90_SYNWW     3 NKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYACQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI 159
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhh..........hhhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh..eeeeehhhhhhhh.hhhhh....eeehhhhhhhhhhh..eeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pnx E   3 NKKmNLLLFSGDYDKALASLIIANAAREmEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKmNLGGIGKKmLLEmmKEEKAPKLSDLLSGARKKEVKFYAcQLSVEImGFKKEELFPEVQImDVKEYLKNALESDLQLFI 159
                               |    12        22        32        42        52        62        72        82       |92 ||    102       112       122    |  132       142       152       
                               6-MSE                   31-MSE                                            81-MSE   90-MSE|                      120-OCS  |           141-MSE              
                                                                                                                      94-MSE                          127-MSE                            
                                                                                                                       95-MSE                                                            

Chain F from PDB  Type:PROTEIN  Length:157
 aligned with Q0AU90_SYNWW | Q0AU90 from UniProtKB/TrEMBL  Length:159

    Alignment length:157
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       
         Q0AU90_SYNWW     3 NKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYACQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI 159
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) DrsE_2-3pnxF01 F:3-158                                                                                                                                      - Pfam domains (1)
           Pfam domains (2) DrsE_2-3pnxF02 F:3-158                                                                                                                                      - Pfam domains (2)
           Pfam domains (3) DrsE_2-3pnxF03 F:3-158                                                                                                                                      - Pfam domains (3)
           Pfam domains (4) DrsE_2-3pnxF04 F:3-158                                                                                                                                      - Pfam domains (4)
           Pfam domains (5) DrsE_2-3pnxF05 F:3-158                                                                                                                                      - Pfam domains (5)
           Pfam domains (6) DrsE_2-3pnxF06 F:3-158                                                                                                                                      - Pfam domains (6)
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh.....hhhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh..eeeeehhhhhhhh.hhhhh....eeehhhhhhhhhhhh.eeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pnx F   3 NKKmNLLLFSGDYDKALASLIIANAAREmEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKmNLGGIGKKmLLEmmKEEKAPKLSDLLSGARKKEVKFYAcQLSVEImGFKKEELFPEVQImDVKEYLKNALESDLQLFI 159
                               |    12        22        32        42        52        62        72        82       |92 ||    102       112       122    |  132       142       152       
                               6-MSE                   31-MSE                                            81-MSE   90-MSE|                      120-OCS  |           141-MSE              
                                                                                                                      94-MSE                          127-MSE                            
                                                                                                                       95-MSE                                                            

   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

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(no "CATH Domain" information available for 3PNX)

(-) Pfam Domains  (1, 6)

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