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(-) Description

Title :  CRYSTAL STRUCTURE OF THE 5'->3' EXORIBONUCLEASE XRN1, E178Q MUTANT
 
Authors :  J. H. Chang, S. Xiang, L. Tong
Date :  06 Nov 10  (Deposition) - 09 Feb 11  (Release) - 19 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Beta Berrel, Tudor Domain, Chromo Domain, Mrna Turnover, Rrna Processing, Rna Binding, Dna Binding, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. H. Chang, S. Xiang, K. Xiang, J. L. Manley, L. Tong
Structural And Biochemical Studies Of The 5' -> 3' Exoribonuclease Xrn1.
Nat. Struct. Mol. Biol. V. 18 270 2011
PubMed-ID: 21297639  |  Reference-DOI: 10.1038/NSMB.1984

(-) Compounds

Molecule 1 - 5'->3' EXORIBONUCLEASE (XRN1)
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: KLLA0F22385G
    Mutation: YES
    Organism Common: YEAST
    Organism Scientific: KLUYVEROMYCES LACTIS
    Organism Taxid: 28985

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 125)

Asymmetric Unit (1, 125)
No.NameCountTypeFull Name
1UNK125Mod. Amino Acid
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid

(-) Sites  (0, 0)

(no "Site" information available for 3PIE)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3PIE)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Val A:1093 -Ala A:1094

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3PIE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3PIE)

(-) Exons   (0, 0)

(no "Exon" information available for 3PIE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1057
 aligned with Q6CJ09_KLULA | Q6CJ09 from UniProtKB/TrEMBL  Length:1453

    Alignment length:1238
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982       992      1002      1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232        
        Q6CJ09_KLULA      3 IPKFFHFISERWPQISQLIDGSQIPEFDNLYLDMNSILHNCTHGDGSEVNSRLSEEEVYSKIFSYIDHLFHTIKPKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKAIENGDELPKGEPFDSNAITPGTEFMAKLTENLKYFIHDKITNDTRWQNVKVIFSGHEVPGEGEHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGKRSSSVKTLETQNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHLKKGAFPVLLQTFKEALQHMDGYINEQGKINLARFSIWLKYLSDFEYLNFEKKDIDVEWFNQQLENISLEGERKRTRMGKKLLMKQQKKLIGAVKPWLLKTVQRKVTSELQDADFEIFPLEDKELVRANLDFLKEFAFDLGLILAHSKSKDLYYFKLDLDSINVQETDEEHEARIHETRRSIKKYEQGIIIASEEELEEEREIYSERFVEWKDQYYKDKLDFSINDTDSLKEMTENYVGGLQWVLYYYYRGCPSWSWYYRYHYAPRISDVIKGIDQNIEFHKGQPFKPFQQLMAVLPERSKNLIPVVYRPLMYDEHSPILDFYPNEVELDLNGKTADWEAVVKISFVDQKRLVEAMAPYDAKLSPDEKKRNSFGTDLIFIFNPQVDTVYKTPLAGLFNDIEHNHCIEREFIPESMENVKFLFGLPKGAKLGASSLAGFPSLKTLPLTAELAYNSSVVFNFPSKQQSMVLHIQDLYKENGISLSDLAKRHMGKIVYSRWPFLRESKLLSLITEETVYEGVKSGKLTKVIERKPQDFERKEFRELKMTLKSNYQRTKAILLDDISALAKVVPVNGLVRNSDGSYSKSFNETIEYYPLQLIVEDVKNKDERYIEKEPLPINKEFPKGSKVVFLGDYAYGGEATVDGYNSETRLKLTVKKGSLRAEPNIGKVRAKLDSQALRFYPTQVFSKIARVHPLFLSKITSRYLVNDSKKKSHNVGLMIKFKARNQKVLGYARCSSNKWEYSDVALGLLEQFRSTFPEFFAKLSNSKEQAIPSITDLFPNKSSAEADSILKTVADWLSEARKPFVVVSLESDSLTKASMAAVESEIIKYVSLPDSSEQKKLAKVPREAILNAESSYVLLRSQRFHLGDRVMYIQDSGKVPLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRLQTRRGLGLDSSFLLNLSDRQLVY 1240
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh...eee..........eeeeehhhhhhhhhh.-------..hhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhhhhhh....------------.hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhh.........eeee...hhhhhhhhhh....eeeeee...---------hhhhh.eeeeehhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......---......eee.hhhhhhhhhhhhhhhhhhhheeee.......eeeee.....------....hhhhhhhhhhhhhhh----------------.hhhhhhhhhhhhhh.------...hhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhh............hhhhhhhhh....hhhhh....------------.......-------------.......hhhhhhhhhhhhhh..hhhhhhhh.....eeeee........................eeeee...................hhhhh...........eeeeee..............eeeeee....-----hhhhhhhhhh..eeeehhhhheeeeeeeee....eeeeee....eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhee......eeeeeeeeeeee.....eeeee....eeehhhhh.......hhhhh.....hhhhhh....eeee.......eeeeeeee....eeeeeeee.......hhhhhhhhhhhhhh......-.hhhh------------------------------------------------------------------------------------------hhhhhhhhh.-...hhhhhhhh.............hhhhhhhhhhhhhhhh......eeeeeeeee...eehhhhhhhhhhh.......eeee...........eeeeeeeeee..eeeeeeee..................eeeee...eee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3pie A    3 IPKFFHFISERWPQISQLIDGSQIPEFDNLYLDMNSILHNCTHG-------RLSEEEVYSKIFSYIDHLFHTIKPKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKA------------FDSNAITPGTEFMAKLTENLKYFIHDKITNDTRWQNVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVT---------TLETQNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHLKKGAFPVLLQTFKEALQHMDGYINEQGKINLARFSIWLKYLSDFEYLNFEKKDIDVEWFNQQLENISLEGERKRTRMGKKLLMKQQKKLIGAVKPWLLKTVQRKVTS---DADFEIFPLEDKELVRANLDFLKEFAFDLGLILAHSKSKDLYYFKLDLDSI------xxxxxxxxxxxxxxxxxxx----------------YSERFVEWKDQYYKDK------DTDSLKEMTENYVGGLQWVLYYYYRGCPSWSWYYRYHYAPRISDVIKGIDQNIEFHKGQPFKPFQQLMAVLPERSKNLIPVVY------------DFYPNEV-------------VVKISFVDQKRLVEAMAPYDAKLSPDEKKRNSFGTDLIFIFNPQVDTVYKTPLAGLFNDIEHNHCIEREFIPESMENVKFLFGLPKGAKLGASSLAGFPSLKTLPLTAELAYNSSVVFNFPSKQQSMVLHIQDLY-----SLSDLAKRHMGKIVYSRWPFLRESKLLSLITEETVYEGVKSGKLTKVIERKPQDFERKEFRELKMTLKSNYQRTKAILLDDISALAKVVPVNGLVRNSDGSYSKSFNETIEYYPLQLIVEDVKNKDERYIEKEPLPINKEFPKGSKVVFLGDYAYGGEATVDGYNSETRLKLTVKKGSLRAEPNIGKVRAKLDSQALRFYPTQ-xxxxx------------------------------------------------------------------------------------------xxxxxxxxxx-KTVADWLSEARKPFVVVSLESDSLTKASMAAVESEIIKYVSLPDSSEQKKLAKVPREAILNAESSYVLLRSQRFHLGDRVMYIQDSGKVPLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRLQTRRGLGLDSSFLLNLSDRQLVY 1240
                                    12        22        32        42   |     - |      62        72        82        92       102       112  |      -     | 132       142       152       162       172       182       192       202       212       222      |  -      |242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402     | 412       422       432       442       452       462      |472|||||||482|||||    -         - |     512      |  -   |   532       542       552       562       572       582       592       602     |   -       622    |    -       642       652       662       672       682       692       702       712       722       732       742       752       762       772  |    782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982| |||||  -         -         -         -         -         -         -         -         -      1045||||||1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232        
                                                                      46      54                                                          115          128                                                                                                  229       239                                                                                                                                                                      408 412                                               462      ||||||477-UNK||486-UNK           504            519    526                                                                               608          621   627           641                                                                                                                                   775   781                                                                                                                                                                                                       983 |||||                                                                                       1043-UNK|1052-UNK                                                                                                                                                   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            469-UNK||478-UNK||487-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          1038-UNK                                                                                        1044-UNK||1091                                                                                                                                                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             470-UNK||479-UNK||                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 1039-UNK                                                                                        1045-UNK||                                                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              471-UNK| 480-UNK|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  1040-UNK                                                                                        1046-UNK|                                                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               472-UNK  481-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   1041-UNK                                                                                        1047-UNK                                                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                473-UNK  482-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   1042-UNK                                                                                        1048-UNK                                                                                                                                                       
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 474-UNK  483-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   1049-UNK                                                                                                                                                      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  475-UNK  484-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   1050-UNK                                                                                                                                                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   476-UNK  485-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   1051-UNK                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:1056
 aligned with Q6CJ09_KLULA | Q6CJ09 from UniProtKB/TrEMBL  Length:1453

    Alignment length:1238
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982       992      1002      1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232        
        Q6CJ09_KLULA      3 IPKFFHFISERWPQISQLIDGSQIPEFDNLYLDMNSILHNCTHGDGSEVNSRLSEEEVYSKIFSYIDHLFHTIKPKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKAIENGDELPKGEPFDSNAITPGTEFMAKLTENLKYFIHDKITNDTRWQNVKVIFSGHEVPGEGEHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGKRSSSVKTLETQNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHLKKGAFPVLLQTFKEALQHMDGYINEQGKINLARFSIWLKYLSDFEYLNFEKKDIDVEWFNQQLENISLEGERKRTRMGKKLLMKQQKKLIGAVKPWLLKTVQRKVTSELQDADFEIFPLEDKELVRANLDFLKEFAFDLGLILAHSKSKDLYYFKLDLDSINVQETDEEHEARIHETRRSIKKYEQGIIIASEEELEEEREIYSERFVEWKDQYYKDKLDFSINDTDSLKEMTENYVGGLQWVLYYYYRGCPSWSWYYRYHYAPRISDVIKGIDQNIEFHKGQPFKPFQQLMAVLPERSKNLIPVVYRPLMYDEHSPILDFYPNEVELDLNGKTADWEAVVKISFVDQKRLVEAMAPYDAKLSPDEKKRNSFGTDLIFIFNPQVDTVYKTPLAGLFNDIEHNHCIEREFIPESMENVKFLFGLPKGAKLGASSLAGFPSLKTLPLTAELAYNSSVVFNFPSKQQSMVLHIQDLYKENGISLSDLAKRHMGKIVYSRWPFLRESKLLSLITEETVYEGVKSGKLTKVIERKPQDFERKEFRELKMTLKSNYQRTKAILLDDISALAKVVPVNGLVRNSDGSYSKSFNETIEYYPLQLIVEDVKNKDERYIEKEPLPINKEFPKGSKVVFLGDYAYGGEATVDGYNSETRLKLTVKKGSLRAEPNIGKVRAKLDSQALRFYPTQVFSKIARVHPLFLSKITSRYLVNDSKKKSHNVGLMIKFKARNQKVLGYARCSSNKWEYSDVALGLLEQFRSTFPEFFAKLSNSKEQAIPSITDLFPNKSSAEADSILKTVADWLSEARKPFVVVSLESDSLTKASMAAVESEIIKYVSLPDSSEQKKLAKVPREAILNAESSYVLLRSQRFHLGDRVMYIQDSGKVPLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRLQTRRGLGLDSSFLLNLSDRQLVY 1240
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh...eee........eeeeeeehhhhhhhh...-------..hhhhhhhhhhhhhhhhhhhhheeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh...------------.hhhhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhheeeee......hhhhhhhhhhhhhhhh........eeee...hhhhhhhhh.....eeeeee...---------......eeeeehhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....---......eee.hhhhhhhhhhhhhhhhhhh.eeeee......eeeee.....------.....hhhhhhhhhhhhhh----------------.hhhhhhhhhhhhhhh------...hhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhh............hhhhhhhhh....hhhhh....-------------......-------------.......hhhhhhhhhhhhhh..hhhhhhh......eeeee........................eeeee...................hhhhh...........eeeeee..............eeeeee....-----hhhhhhhhhh..eeeehhhhheeeeeeeee....eeeeee....eeeeee..hhhhhhhhhhhhhhhhhhhhhhhheee.....eeeeeeeeeeee.....eeeee....eeee.hhh.......hhhhh.....hhhhhh....eeee.......eeeeeeee....eeeeeee........hhhhhhhhhhhhhh.ee...-..eeh------------------------------------------------------------------------------------------hhhhhhhhhhh.-..hhhhhh..............hhhhhhhhhhhhhhhhh............ee...eehhhhhhhhhhhh......eeee...........eeeeeeee......eeeeee........hhhhh.....eeeee...eee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3pie B    3 IPKFFHFISERWPQISQLIDGSQIPEFDNLYLDMNSILHNCTHG-------RLSEEEVYSKIFSYIDHLFHTIKPKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKA------------FDSNAITPGTEFMAKLTENLKYFIHDKITNDTRWQNVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVT---------TLETQNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHLKKGAFPVLLQTFKEALQHMDGYINEQGKINLARFSIWLKYLSDFEYLNFEKKDIDVEWFNQQLENISLEGERKRTRMGKKLLMKQQKKLIGAVKPWLLKTVQRKVTS---DADFEIFPLEDKELVRANLDFLKEFAFDLGLILAHSKSKDLYYFKLDLDSI------xxxxxxxxxxxxxxxxxxx----------------YSERFVEWKDQYYKDK------DTDSLKEMTENYVGGLQWVLYYYYRGCPSWSWYYRYHYAPRISDVIKGIDQNIEFHKGQPFKPFQQLMAVLPERSKNLIPVVY-------------FYPNEV-------------VVKISFVDQKRLVEAMAPYDAKLSPDEKKRNSFGTDLIFIFNPQVDTVYKTPLAGLFNDIEHNHCIEREFIPESMENVKFLFGLPKGAKLGASSLAGFPSLKTLPLTAELAYNSSVVFNFPSKQQSMVLHIQDLY-----SLSDLAKRHMGKIVYSRWPFLRESKLLSLITEETVYEGVKSGKLTKVIERKPQDFERKEFRELKMTLKSNYQRTKAILLDDISALAKVVPVNGLVRNSDGSYSKSFNETIEYYPLQLIVEDVKNKDERYIEKEPLPINKEFPKGSKVVFLGDYAYGGEATVDGYNSETRLKLTVKKGSLRAEPNIGKVRAKLDSQALRFYPTQ-xxxxx------------------------------------------------------------------------------------------xxxxxxxxxxxx-VADWLSEARKPFVVVSLESDSLTKASMAAVESEIIKYVSLPDSSEQKKLAKVPREAILNAESSYVLLRSQRFHLGDRVMYIQDSGKVPLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRLQTRRGLGLDSSFLLNLSDRQLVY 1240
                                    12        22        32        42   |     - |      62        72        82        92       102       112  |      -     | 132       142       152       162       172       182       192       202       212       222      |  -      |242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402     | 412       422       432       442       452       462      |472|||||||482|||||    -         - |     512      |  -   |   532       542       552       562       572       582       592       602     |   -       622    |    -       642       652       662       672       682       692       702       712       722       732       742       752       762       772  |    782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982| |||||  -         -         -         -         -         -         -         -         -      1043|||||||||-|     1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232        
                                                                      46      54                                                          115          128                                                                                                  229       239                                                                                                                                                                      408 412                                               462      ||||||477-UNK||486-UNK           504            519    526                                                                               608           622  627           641                                                                                                                                   775   781                                                                                                                                                                                                       983 |||||                                                                                       1041-UNK|1050-UNK                                                                                                                                                   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            469-UNK||478-UNK||487-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          1036-UNK                                                                                        1042-UNK|1051-UNK                                                                                                                                                  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             470-UNK||479-UNK||                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 1037-UNK                                                                                        1043-UNK|1052-UNK                                                                                                                                                 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              471-UNK| 480-UNK|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  1038-UNK                                                                                        1044-UNK| 1093                                                                                                                                                   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               472-UNK  481-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   1039-UNK                                                                                        1045-UNK                                                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                473-UNK  482-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   1040-UNK                                                                                        1046-UNK                                                                                                                                                       
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 474-UNK  483-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   1047-UNK                                                                                                                                                      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  475-UNK  484-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   1048-UNK                                                                                                                                                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   476-UNK  485-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   1049-UNK                                                                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:1066
 aligned with Q6CJ09_KLULA | Q6CJ09 from UniProtKB/TrEMBL  Length:1453

    Alignment length:1238
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982       992      1002      1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232        
        Q6CJ09_KLULA      3 IPKFFHFISERWPQISQLIDGSQIPEFDNLYLDMNSILHNCTHGDGSEVNSRLSEEEVYSKIFSYIDHLFHTIKPKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKAIENGDELPKGEPFDSNAITPGTEFMAKLTENLKYFIHDKITNDTRWQNVKVIFSGHEVPGEGEHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGKRSSSVKTLETQNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHLKKGAFPVLLQTFKEALQHMDGYINEQGKINLARFSIWLKYLSDFEYLNFEKKDIDVEWFNQQLENISLEGERKRTRMGKKLLMKQQKKLIGAVKPWLLKTVQRKVTSELQDADFEIFPLEDKELVRANLDFLKEFAFDLGLILAHSKSKDLYYFKLDLDSINVQETDEEHEARIHETRRSIKKYEQGIIIASEEELEEEREIYSERFVEWKDQYYKDKLDFSINDTDSLKEMTENYVGGLQWVLYYYYRGCPSWSWYYRYHYAPRISDVIKGIDQNIEFHKGQPFKPFQQLMAVLPERSKNLIPVVYRPLMYDEHSPILDFYPNEVELDLNGKTADWEAVVKISFVDQKRLVEAMAPYDAKLSPDEKKRNSFGTDLIFIFNPQVDTVYKTPLAGLFNDIEHNHCIEREFIPESMENVKFLFGLPKGAKLGASSLAGFPSLKTLPLTAELAYNSSVVFNFPSKQQSMVLHIQDLYKENGISLSDLAKRHMGKIVYSRWPFLRESKLLSLITEETVYEGVKSGKLTKVIERKPQDFERKEFRELKMTLKSNYQRTKAILLDDISALAKVVPVNGLVRNSDGSYSKSFNETIEYYPLQLIVEDVKNKDERYIEKEPLPINKEFPKGSKVVFLGDYAYGGEATVDGYNSETRLKLTVKKGSLRAEPNIGKVRAKLDSQALRFYPTQVFSKIARVHPLFLSKITSRYLVNDSKKKSHNVGLMIKFKARNQKVLGYARCSSNKWEYSDVALGLLEQFRSTFPEFFAKLSNSKEQAIPSITDLFPNKSSAEADSILKTVADWLSEARKPFVVVSLESDSLTKASMAAVESEIIKYVSLPDSSEQKKLAKVPREAILNAESSYVLLRSQRFHLGDRVMYIQDSGKVPLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRLQTRRGLGLDSSFLLNLSDRQLVY 1240
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh...eee..........eeeeehhhhhhhhhh.-------..hhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhhhhhh....------------.hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee......hhhhhhhhhhhhhh..........eeee...hhhhhhhhhh....eeeeee...---------......eeeeehhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh......ee..eehhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....---......eee.hhhhhh.hhhhhhhhhhhhh...ee......eee.......------......hhhhhhhhhhh..----------------....hhhhhh......------...hhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhh............hhhhhhhh.....hhhhh....------------.......-------------.......hhhhhhhhhhhhhh..hhhhhhhh.....eee.......eee..........eeeee...eee...................hhhhh...........eeeeee..............eeeeee....-----hhhhhhhhhh..eeeehhhhheeeeeeeee....eeeeee....eeeeee.....hhhhhhhhhhhhhhhhhhhhhee......eeeeeeeeeeee.....eeeee....eeee.hhh.......hhhhh.....hhhhhh....eeee.......eeeeeeeeee..eeeeeee........hhhhhhhhhhhhh......-..hhhhhhhhhhhhhh.----------------------------------------------------------------------------------.hhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhh........eeeeeee...ee....hhhhhhh.......eeee...........eeeeeeeeee..eeeeeeee..................eeeee...eee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3pie C    3 IPKFFHFISERWPQISQLIDGSQIPEFDNLYLDMNSILHNCTHG-------RLSEEEVYSKIFSYIDHLFHTIKPKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKA------------FDSNAITPGTEFMAKLTENLKYFIHDKITNDTRWQNVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVT---------TLETQNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHLKKGAFPVLLQTFKEALQHMDGYINEQGKINLARFSIWLKYLSDFEYLNFEKKDIDVEWFNQQLENISLEGERKRTRMGKKLLMKQQKKLIGAVKPWLLKTVQRKVTS---DADFEIFPLEDKELVRANLDFLKEFAFDLGLILAHSKSKDLYYFKLDLDSI------xxxxxxxxxxxxxxxxxxx----------------YSERFVEWKDQYYKDK------DTDSLKEMTENYVGGLQWVLYYYYRGCPSWSWYYRYHYAPRISDVIKGIDQNIEFHKGQPFKPFQQLMAVLPERSKNLIPVVY------------DFYPNEV-------------VVKISFVDQKRLVEAMAPYDAKLSPDEKKRNSFGTDLIFIFNPQVDTVYKTPLAGLFNDIEHNHCIEREFIPESMENVKFLFGLPKGAKLGASSLAGFPSLKTLPLTAELAYNSSVVFNFPSKQQSMVLHIQDLY-----SLSDLAKRHMGKIVYSRWPFLRESKLLSLITEETVYEGVKSGKLTKVIERKPQDFERKEFRELKMTLKSNYQRTKAILLDDISALAKVVPVNGLVRNSDGSYSKSFNETIEYYPLQLIVEDVKNKDERYIEKEPLPINKEFPKGSKVVFLGDYAYGGEATVDGYNSETRLKLTVKKGSLRAEPNIGKVRAKLDSQALRFYPT-xxxxxxxxxxxxxxxxx----------------------------------------------------------------------------------SAEADSILKTVADWLSEARKPFVVVSLESDSLTKASMAAVESEIIKYVSLPDSSEQKKLAKVPREAILNAESSYVLLRSQRFHLGDRVMYIQDSGKVPLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRLQTRRGLGLDSSFLLNLSDRQLVY 1240
                                    12        22        32        42   |     - |      62        72        82        92       102       112  |      -     | 132       142       152       162       172       182       192       202       212       222      |  -      |242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402     | 412       422       432       442       452       462      |472|||||||482|||||    -         - |     512      |  -   |   532       542       552       562       572       582       592       602     |   -       622    |    -       642       652       662       672       682       692       702       712       722       732       742       752       762       772  |    782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982 |||||1046|||||||| -         -         -         -         -         -         -         -         -|     1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232        
                                                                      46      54                                                          115          128                                                                                                  229       239                                                                                                                                                                      408 412                                               462      ||||||477-UNK||486-UNK           504            519    526                                                                               608          621   627           641                                                                                                                                   775   781                                                                                                                                                                                                      982 |||||1046-UNK||||                                                                               1083                                                                                                                                                             
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Chain D from PDB  Type:PROTEIN  Length:1023
 aligned with Q6CJ09_KLULA | Q6CJ09 from UniProtKB/TrEMBL  Length:1453

    Alignment length:1238
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982       992      1002      1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232        
        Q6CJ09_KLULA      3 IPKFFHFISERWPQISQLIDGSQIPEFDNLYLDMNSILHNCTHGDGSEVNSRLSEEEVYSKIFSYIDHLFHTIKPKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKAIENGDELPKGEPFDSNAITPGTEFMAKLTENLKYFIHDKITNDTRWQNVKVIFSGHEVPGEGEHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGKRSSSVKTLETQNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHLKKGAFPVLLQTFKEALQHMDGYINEQGKINLARFSIWLKYLSDFEYLNFEKKDIDVEWFNQQLENISLEGERKRTRMGKKLLMKQQKKLIGAVKPWLLKTVQRKVTSELQDADFEIFPLEDKELVRANLDFLKEFAFDLGLILAHSKSKDLYYFKLDLDSINVQETDEEHEARIHETRRSIKKYEQGIIIASEEELEEEREIYSERFVEWKDQYYKDKLDFSINDTDSLKEMTENYVGGLQWVLYYYYRGCPSWSWYYRYHYAPRISDVIKGIDQNIEFHKGQPFKPFQQLMAVLPERSKNLIPVVYRPLMYDEHSPILDFYPNEVELDLNGKTADWEAVVKISFVDQKRLVEAMAPYDAKLSPDEKKRNSFGTDLIFIFNPQVDTVYKTPLAGLFNDIEHNHCIEREFIPESMENVKFLFGLPKGAKLGASSLAGFPSLKTLPLTAELAYNSSVVFNFPSKQQSMVLHIQDLYKENGISLSDLAKRHMGKIVYSRWPFLRESKLLSLITEETVYEGVKSGKLTKVIERKPQDFERKEFRELKMTLKSNYQRTKAILLDDISALAKVVPVNGLVRNSDGSYSKSFNETIEYYPLQLIVEDVKNKDERYIEKEPLPINKEFPKGSKVVFLGDYAYGGEATVDGYNSETRLKLTVKKGSLRAEPNIGKVRAKLDSQALRFYPTQVFSKIARVHPLFLSKITSRYLVNDSKKKSHNVGLMIKFKARNQKVLGYARCSSNKWEYSDVALGLLEQFRSTFPEFFAKLSNSKEQAIPSITDLFPNKSSAEADSILKTVADWLSEARKPFVVVSLESDSLTKASMAAVESEIIKYVSLPDSSEQKKLAKVPREAILNAESSYVLLRSQRFHLGDRVMYIQDSGKVPLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRLQTRRGLGLDSSFLLNLSDRQLVY 1240
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) XRN_N-3pieD01 D:3-228                                                                                                                                                                                                             -         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------   ---------------------------------------------------      -------------------                ----------------      -----------------------------------------------------------------------------------             -----              ---------------------------------------------------------------------------------------------------------------------------------------     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------                                                                                                                            --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) XRN_N-3pieD02 D:3-228                                                                                                                                                                                                             -         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------   ---------------------------------------------------      -------------------                ----------------      -----------------------------------------------------------------------------------             -----              ---------------------------------------------------------------------------------------------------------------------------------------     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------                                                                                                                            --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) XRN_N-3pieD03 D:3-228                                                                                                                                                                                                             -         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------   ---------------------------------------------------      -------------------                ----------------      -----------------------------------------------------------------------------------             -----              ---------------------------------------------------------------------------------------------------------------------------------------     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------                                                                                                                            --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) XRN_N-3pieD04 D:3-228                                                                                                                                                                                                             -         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------   ---------------------------------------------------      -------------------                ----------------      -----------------------------------------------------------------------------------             -----              ---------------------------------------------------------------------------------------------------------------------------------------     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------                                                                                                                            --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author ..hhhhhhhh.....eeee.......eeeeeeehhhhhhhhhh.-------..hhhhhhhhhhhhhhhhhhhhheeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh...------------.hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhheeeee......hhhhhhhhhhhhhhhh........eeee...hhhhhhhhhh....eeeeee...---------......eeeeehhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh......---......ee..hhhhhhhhhhhhhhhhh.....eee......eee.......------...hhhhhhhhhhhhhh..----------------.hhhhhhhhhhhhhhh------...hhhhhhhhhhhhhhhhhhhhhh..................hhhhhh............hhhhhhhhh....hhhhh....-------------.....--------------........hhhhhhhhhhhhhh.hhhhhh.......eeeee........................eeeee...................hhhhh...........eeeeee..............eeeeee....-----hhhhhhhhhh..eeeehhhhheeeeeeeee....eeeeee....eee.....hhhhhhhhhhhhhhhhhhhhhhhhee......eeeeeeeeeeee.....eeeee....eeee.hhh.......hhhhh.....hhhhhh....eeee.hhhhh.eeeeeeee.....eeeeee........hhhhhhhhhhhh......----------------------------------------------------------------------------------------------------------------------------......ee.hhhhhhhhhhhhhhhhhh.......eeeeehhh.ee.hhhhhhhhhh.......eeee...........eeeeeeee......eeeeee..................eeeee...eee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3pie D    3 IPKFFHFISERWPQISQLIDGSQIPEFDNLYLDMNSILHNCTHG-------RLSEEEVYSKIFSYIDHLFHTIKPKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKA------------FDSNAITPGTEFMAKLTENLKYFIHDKITNDTRWQNVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVT---------TLETQNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHLKKGAFPVLLQTFKEALQHMDGYINEQGKINLARFSIWLKYLSDFEYLNFEKKDIDVEWFNQQLENISLEGERKRTRMGKKLLMKQQKKLIGAVKPWLLKTVQRKVTS---DADFEIFPLEDKELVRANLDFLKEFAFDLGLILAHSKSKDLYYFKLDLDSI------xxxxxxxxxxxxxxxxxxx----------------YSERFVEWKDQYYKDK------DTDSLKEMTENYVGGLQWVLYYYYRGCPSWSWYYRYHYAPRISDVIKGIDQNIEFHKGQPFKPFQQLMAVLPERSKNLIPVVY-------------FYPNE--------------VVKISFVDQKRLVEAMAPYDAKLSPDEKKRNSFGTDLIFIFNPQVDTVYKTPLAGLFNDIEHNHCIEREFIPESMENVKFLFGLPKGAKLGASSLAGFPSLKTLPLTAELAYNSSVVFNFPSKQQSMVLHIQDLY-----SLSDLAKRHMGKIVYSRWPFLRESKLLSLITEETVYEGVKSGKLTKVIERKPQDFERKEFRELKMTLKSNYQRTKAILLDDISALAKVVPVNGLVRNSDGSYSKSFNETIEYYPLQLIVEDVKNKDERYIEKEPLPINKEFPKGSKVVFLGDYAYGGEATVDGYNSETRLKLTVKKGSLRAEPNIGKVRAKLDSQALRFYP----------------------------------------------------------------------------------------------------------------------------VVSLESDSLTKASMAAVESEIIKYVSLPDSSEQKKLAKVPREAILNAESSYVLLRSQRFHLGDRVMYIQDSGKVPLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRLQTRRGLGLDSSFLLNLSDRQLVY 1240
                                    12        22        32        42   |     - |      62        72        82        92       102       112  |      -     | 132       142       152       162       172       182       192       202       212       222      |  -      |242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402     | 412       422       432       442       452       462      |472|||||||482|||||    -         - |     512      |  -   |   532       542       552       562       572       582       592       602     |   -       622   |     -       642       652       662       672       682       692       702       712       722       732       742       752       762       772  |    782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972        |-         -         -         -         -         -         -         -         -         -         -         -         -   |  1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232        
                                                                      46      54                                                          115          128                                                                                                  229       239                                                                                                                                                                      408 412                                               462      ||||||477-UNK||486-UNK           504            519    526                                                                               608           622 626            641                                                                                                                                   775   781                                                                                                                                                                                                     981                                                                                                                         1106                                                                                                                                      
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  475-UNK  484-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   476-UNK  485-UNK
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3PIE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3PIE)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: PIN (27)

(-) Gene Ontology  (20, 20)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q6CJ09_KLULA | Q6CJ09)
molecular function
    GO:0008409    5'-3' exonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 5' end.
    GO:0004534    5'-3' exoribonuclease activity    Catalysis of the sequential cleavage of mononucleotides from a free 5' terminus of an RNA molecule.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003682    chromatin binding    Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
    GO:0004527    exonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004518    nuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
biological process
    GO:0090503    RNA phosphodiester bond hydrolysis, exonucleolytic    The chemical reactions and pathways involving the hydrolysis of terminal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides.
    GO:0070651    nonfunctional rRNA decay    An rRNA catabolic process that results in the targeted detection and degradation of aberrant rRNAs contained within translationally defective ribosomes, thereby acting as a quality-control system.
    GO:0000956    nuclear-transcribed mRNA catabolic process    The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells.
    GO:0000184    nuclear-transcribed mRNA catabolic process, nonsense-mediated decay    The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
    GO:0032968    positive regulation of transcription elongation from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
    GO:0060261    positive regulation of transcription initiation from RNA polymerase II promoter    Any process that increases the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter.
    GO:0007089    traversing start control point of mitotic cell cycle    A cell cycle process by which a cell commits to entering S phase via a positive feedback mechanism between the regulation of transcription and G1 CDK activity.
cellular component
    GO:0000932    P-body    A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0010494    cytoplasmic stress granule    A dense aggregation in the cytosol composed of proteins and RNAs that appear when the cell is under stress.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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    Val A:1093 - Ala A:1094   [ RasMol ]  
 
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  3pie
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        Q6CJ09_KLULA | Q6CJ09: 3pif

(-) Related Entries Specified in the PDB File

3pif