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(-) Description

Title :  CRYSTAL STRUCTURE OF GAMMA-HYDROXYBUTYRATE DEHYDROGENASE FROM GEOBACTER METALLIREDUCENS IN COMPLEX WITH NADP+
 
Authors :  Y. Zhang, R. M. Garavito
Date :  26 Oct 10  (Deposition) - 07 Dec 11  (Release) - 01 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.07
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Gamma-Hydroxybutyrate Dehydrogenase, Succinic Semialdehyde Reductase, Geobacter Metallireducens, Nadp+, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Zhang, Y. Zheng, L. Qin, S. Wang, G. W. Buchko, R. M. Garavito
Structural Characterization Of A Beta-Hydroxyacid Dehydrogenase From Geobacter Sulfurreducens And Geobacter Metallireducens With Succinic Semialdehyde Reductase Activity.
Biochimie V. 104 61 2014
PubMed-ID: 24878278  |  Reference-DOI: 10.1016/J.BIOCHI.2014.05.002

(-) Compounds

Molecule 1 - 6-PHOSPHOGLUCONATE DEHYDROGENASE, NAD-BINDING
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PLW01
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: GMET_3011
    Mutation: YES
    Organism Scientific: GEOBACTER METALLIREDUCENS
    Organism Taxid: 28232

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 29)

Asymmetric Unit (5, 29)
No.NameCountTypeFull Name
1CSO8Mod. Amino AcidS-HYDROXYCYSTEINE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3GOL7Ligand/IonGLYCEROL
4NAP8Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
5PEG5Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (5, 16)
No.NameCountTypeFull Name
1CSO4Mod. Amino AcidS-HYDROXYCYSTEINE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3GOL5Ligand/IonGLYCEROL
4NAP4Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
5PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (4, 13)
No.NameCountTypeFull Name
1CSO4Mod. Amino AcidS-HYDROXYCYSTEINE
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3GOL2Ligand/IonGLYCEROL
4NAP4Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
5PEG3Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:9 , GLY A:10 , ILE A:11 , MET A:12 , ASN A:31 , ARG A:32 , SER A:33 , LYS A:36 , MET A:64 , LEU A:65 , ALA A:66 , ALA A:70 , GLU A:73 , VAL A:74 , THR A:96 , VAL A:121 , GLY A:123 , SER A:124 , ALA A:231 , PHE A:232 , PRO A:233 , HIS A:236 , LYS A:239 , GOL A:288 , HOH A:296 , HOH A:315 , HOH A:333 , HOH A:343 , HOH A:362 , HOH A:456 , HOH A:572 , HOH A:1002BINDING SITE FOR RESIDUE NAP A 301
02AC2SOFTWAREGLY A:123 , SER A:124 , LYS A:171 , ASN A:175 , MET A:178 , PHE A:232 , NAP A:301 , HOH A:479 , HOH A:572 , HOH A:635 , HOH A:693BINDING SITE FOR RESIDUE GOL A 288
03AC3SOFTWAREASP A:67 , LYS A:235 , HIS A:236 , LYS A:239 , ARG A:242 , ARG A:269BINDING SITE FOR RESIDUE GOL A 289
04AC4SOFTWARELEU A:203 , GLY A:207 , ALA A:212 , ASN A:213 , PHE A:216 , ALA A:217BINDING SITE FOR RESIDUE GOL A 290
05AC5SOFTWAREALA A:246 , ASP A:249 , HOH A:307 , ARG D:242 , HOH D:311 , HOH D:476BINDING SITE FOR RESIDUE PEG A 291
06AC6SOFTWAREGLY A:106 , VAL A:110 , PHE A:116 , VAL A:164 , HOH A:293 , HOH A:429 , HOH A:662 , HOH A:701BINDING SITE FOR RESIDUE EDO A 292
07AC7SOFTWARELEU B:9 , GLY B:10 , ILE B:11 , MET B:12 , ASN B:31 , ARG B:32 , SER B:33 , MET B:64 , LEU B:65 , ALA B:66 , ALA B:70 , GLU B:73 , VAL B:74 , THR B:96 , VAL B:121 , GLY B:123 , SER B:124 , ALA B:231 , PHE B:232 , PRO B:233 , HIS B:236 , LYS B:239 , HOH B:311 , HOH B:393 , HOH B:500 , HOH B:613 , HOH B:626BINDING SITE FOR RESIDUE NAP B 301
08AC8SOFTWAREARG B:141 , NAP G:301 , HOH G:493 , HOH G:638BINDING SITE FOR RESIDUE GOL B 288
09AC9SOFTWARELEU C:9 , GLY C:10 , ILE C:11 , MET C:12 , ASN C:31 , ARG C:32 , SER C:33 , LYS C:36 , MET C:64 , LEU C:65 , ALA C:66 , ALA C:70 , GLU C:73 , VAL C:74 , THR C:96 , VAL C:121 , GLY C:123 , SER C:124 , ALA C:231 , PHE C:232 , PRO C:233 , HIS C:236 , LYS C:239 , GOL C:288 , HOH C:308 , HOH C:317 , HOH C:445 , HOH C:450 , HOH C:465 , HOH C:582BINDING SITE FOR RESIDUE NAP C 301
10BC1SOFTWAREGLY C:123 , SER C:124 , LYS C:171 , ASN C:175 , MET C:178 , PHE C:232 , NAP C:301BINDING SITE FOR RESIDUE GOL C 288
11BC2SOFTWARELEU D:9 , GLY D:10 , ILE D:11 , MET D:12 , ASN D:31 , ARG D:32 , SER D:33 , MET D:64 , LEU D:65 , ALA D:66 , ALA D:70 , GLU D:73 , VAL D:74 , THR D:96 , VAL D:121 , GLY D:123 , SER D:124 , ALA D:231 , PHE D:232 , PRO D:233 , HIS D:236 , LYS D:239 , HOH D:303 , HOH D:321 , HOH D:324 , HOH D:334 , HOH D:584 , HOH D:586 , HOH D:730 , HOH D:742 , HOH D:922 , HOH D:928 , HOH D:1088BINDING SITE FOR RESIDUE NAP D 301
12BC3SOFTWARELEU D:203 , GLY D:207 , ALA D:212 , ASN D:213 , PHE D:216 , ALA D:217BINDING SITE FOR RESIDUE PEG D 288
13BC4SOFTWARELEU E:9 , GLY E:10 , ILE E:11 , MET E:12 , ASN E:31 , ARG E:32 , SER E:33 , LYS E:36 , MET E:64 , LEU E:65 , ALA E:66 , ALA E:70 , GLU E:73 , VAL E:74 , THR E:96 , VAL E:121 , GLY E:123 , SER E:124 , ALA E:231 , PHE E:232 , HIS E:236 , LYS E:239 , HOH E:310 , HOH E:317 , HOH E:336 , HOH E:341 , HOH E:481 , HOH E:507 , HOH E:589BINDING SITE FOR RESIDUE NAP E 301
14BC5SOFTWAREASP C:204 , GLY C:207 , ALA C:208 , ARG E:32 , SER E:33BINDING SITE FOR RESIDUE GOL E 288
15BC6SOFTWARELEU E:203 , GLY E:207 , ALA E:212 , ASN E:213 , ALA E:217BINDING SITE FOR RESIDUE GOL E 289
16BC7SOFTWAREALA E:246 , ASP E:249 , HOH E:299 , HOH E:306 , ARG H:242 , HOH H:299BINDING SITE FOR RESIDUE PEG E 290
17BC8SOFTWARELEU F:9 , GLY F:10 , ILE F:11 , MET F:12 , ASN F:31 , ARG F:32 , SER F:33 , LYS F:36 , MET F:64 , LEU F:65 , ALA F:66 , ALA F:70 , GLU F:73 , VAL F:74 , THR F:96 , VAL F:121 , GLY F:123 , SER F:124 , ALA F:231 , PHE F:232 , PRO F:233 , HIS F:236 , LYS F:239 , HOH F:297 , HOH F:593 , HOH F:951 , HOH F:1092BINDING SITE FOR RESIDUE NAP F 301
18BC9SOFTWAREGOL B:288 , LEU G:9 , GLY G:10 , ILE G:11 , MET G:12 , ASN G:31 , ARG G:32 , SER G:33 , MET G:64 , LEU G:65 , ALA G:66 , ALA G:70 , GLU G:73 , VAL G:74 , THR G:96 , VAL G:121 , GLY G:123 , SER G:124 , ALA G:231 , PHE G:232 , HIS G:236 , LYS G:239 , HOH G:309 , HOH G:493 , HOH G:597 , HOH G:638 , HOH G:878 , HOH G:1094BINDING SITE FOR RESIDUE NAP G 301
19CC1SOFTWAREARG A:32 , PRO A:34 , HOH A:309 , LEU G:203 , ILE G:206 , GLY G:207 , ALA G:212 , ASN G:213 , PHE G:216 , ALA G:217 , HOH G:435 , HOH G:839BINDING SITE FOR RESIDUE PEG G 288
20CC2SOFTWARELEU H:9 , GLY H:10 , ILE H:11 , MET H:12 , ASN H:31 , ARG H:32 , SER H:33 , LYS H:36 , MET H:64 , LEU H:65 , ALA H:66 , ALA H:70 , GLU H:73 , VAL H:74 , THR H:96 , GLY H:123 , SER H:124 , ALA H:231 , PHE H:232 , PRO H:233 , HIS H:236 , LYS H:239 , HOH H:448 , HOH H:508 , HOH H:600 , HOH H:686 , HOH H:1098BINDING SITE FOR RESIDUE NAP H 301
21CC3SOFTWARELEU H:203 , ILE H:206 , GLY H:207 , ALA H:212 , ASN H:213 , PHE H:216 , ALA H:217BINDING SITE FOR RESIDUE PEG H 288

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3PEF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3PEF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3PEF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3PEF)

(-) Exons   (0, 0)

(no "Exon" information available for 3PEF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:287
 aligned with Q39R98_GEOMG | Q39R98 from UniProtKB/TrEMBL  Length:287

    Alignment length:287
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       
         Q39R98_GEOMG     1 MQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTIER 287
               SCOP domains d3pefa1 A:1-162 automated matches                                                                                                                                 d3pefa2 A:163-287 automated matches                                                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhh..eeeee..hhhhhhhhhhh..ee..hhhhhhhhh.eeee...hhhhhhhhhhh..hhhhhh....eeee....hhhhhhhhhhhhhhh..eeee..ee.hhhhhhhh.eeeeeeehhhhhhhhhhhhhhheeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pef A   1 SQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPcEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYER 287
                                    10        20        30        40        50 |      60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       
                                                                              52-CSO                                                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:287
 aligned with Q39R98_GEOMG | Q39R98 from UniProtKB/TrEMBL  Length:287

    Alignment length:287
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       
         Q39R98_GEOMG     1 MQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTIER 287
               SCOP domains d3pefb1 B:1-162 automated matches                                                                                                                                 d3pefb2 B:163-287 automated matches                                                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhh..eeeee..hhhhhhhhhh...ee..hhhhhhhhh.eeee...hhhhhhhhhhh..hhhhhh....eeee....hhhhhhhhhhhhhhh..eeee..ee.hhhhhhhh.eeeeeeehhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pef B   1 SQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPcEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYER 287
                                    10        20        30        40        50 |      60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       
                                                                              52-CSO                                                                                                                                                                                                                                       


Chain C from PDB  Type:PROTEIN  Length:287
 aligned with Q39R98_GEOMG | Q39R98 from UniProtKB/TrEMBL  Length:287

    Alignment length:287
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       
         Q39R98_GEOMG     1 MQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTIER 287
               SCOP domains d3pefc1 C:1-162 automated matches                                                                                                                                 d3pefc2 C:163-287 automated matches                                                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhh..eeeee..hhhhhhhhhhh..ee..hhhhhhhhh.eeee...hhhhhhhhhhh............eeee....hhhhhhhhhhhhhh...eeee..ee.hhhhhhhh.eeeeeeehhhhhhhhhhhhhhheeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pef C   1 SQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPcEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYER 287
                                    10        20        30        40        50 |      60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       
                                                                              52-CSO                                                                                                                                                                                                                                       


Chain D from PDB  Type:PROTEIN  Length:286
 aligned with Q39R98_GEOMG | Q39R98 from UniProtKB/TrEMBL  Length:287

    Alignment length:286
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280      
         Q39R98_GEOMG     1 MQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTIE 286
               SCOP domains d3pefd1 D:1-162 automated matches                                                                                                                                 d3pefd2 D:163-286 automated matches                                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhh..eeeee..hhhhhhhhhh...ee..hhhhhhhhh.eeee...hhhhhhhhhhh..hhhhhh....eeee....hhhhhhhhhhhhhhh..eeee..ee.hhhhhhhh.eeeeeeehhhhhhhhhhhhhhheeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pef D   1 SQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPcEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286
                                    10        20        30        40        50 |      60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280      
                                                                              52-CSO                                                                                                                                                                                                                                      


Chain E from PDB  Type:PROTEIN  Length:286
 aligned with Q39R98_GEOMG | Q39R98 from UniProtKB/TrEMBL  Length:287

    Alignment length:286
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280      
         Q39R98_GEOMG     1 MQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTIE 286
               SCOP domains d3pefe1 E:1-162 automated matches                                                                                                                                 d3pefe2 E:163-286 automated matches                                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhh..eeeee..hhhhhhhhhh...ee..hhhhhhhhh.eeee...hhhhhhhhhhh..hhhhhh....eeee....hhhhhhhhhhhhhhh..eeee..ee.hhhhhhhh.eeeeeeehhhhhhhhhhhhhhheeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pef E   1 SQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPcEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286
                                    10        20        30        40        50 |      60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280      
                                                                              52-CSO                                                                                                                                                                                                                                      


Chain F from PDB  Type:PROTEIN  Length:285
 aligned with Q39R98_GEOMG | Q39R98 from UniProtKB/TrEMBL  Length:287

    Alignment length:285
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281     
         Q39R98_GEOMG     2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTIE 286
               SCOP domains d3peff1 F:2-162 automated matches                                                                                                                                d3peff2 F:163-286 automated matches                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhh..eeeee...hhhhhhhhh...ee..hhhhhhhh..eeee...hhhhhhhhhhh..hhhhhh....eeee....hhhhhhhhhhhhhhh..eeee..ee.hhhhhhhh.eeeeeeehhhhhhhhhhhhhhheeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh....hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pef F   2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPcEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286
                                    11        21        31        41        51|       61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281     
                                                                             52-CSO                                                                                                                                                                                                                                      


Chain G from PDB  Type:PROTEIN  Length:287
 aligned with Q39R98_GEOMG | Q39R98 from UniProtKB/TrEMBL  Length:287

    Alignment length:287
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       
         Q39R98_GEOMG     1 MQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTIER 287
               SCOP domains d3pefg1 G:1-162 automated matches                                                                                                                                 d3pefg2 G:163-287 automated matches                                                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhh..eeeee..hhhhhhhhhh...ee..hhhhhhhhh.eeee...hhhhhhhhhhh..hhhhh.....eeee....hhhhhhhhhhhhhh...eeee..ee.hhhhhhhh.eeeeeeehhhhhhhhhhhhhhheeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pef G   1 SQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPcEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYER 287
                                    10        20        30        40        50 |      60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       
                                                                              52-CSO                                                                                                                                                                                                                                       


Chain H from PDB  Type:PROTEIN  Length:286
 aligned with Q39R98_GEOMG | Q39R98 from UniProtKB/TrEMBL  Length:287

    Alignment length:286
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281      
         Q39R98_GEOMG     2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTIER 287
               SCOP domains d3pefh1 H:2-162 automated matches                                                                                                                                d3pefh2 H:163-287 automated matches                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhh..eeeee..hhhhhhhhhh...ee..hhhhhhhh..eeee...hhhhhhhhhhh..hhhhh.....eeee....hhhhhhhhhhhhhhh..eeee..ee.hhhhhhh..eeeeeeehhhhhhhhhhhhhhheeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pef H   2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPcEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYER 287
                                    11        21        31        41        51|       61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281      
                                                                             52-CSO
   Legend:   → Mismatch (orange background)
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 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3PEF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3PEF)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q39R98_GEOMG | Q39R98)
molecular function
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0004616    phosphogluconate dehydrogenase (decarboxylating) activity    Catalysis of the reaction: 6-phospho-D-gluconate + NADP+ = D-ribulose 5-phosphate + CO2 + NADPH + H+.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

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3pdu