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(-) Description

Title :  MECHANISM OF INACTIVATION OF E. COLI ASPARTATE AMINOTRANSFERASE BY (S)-4-AMINO-4,5-DIHYDRO-2-FURANCARBOXYLIC ACID (S-ADFA) PH 8.0
 
Authors :  D. Liu, E. Pozharski, M. Fu, R. B. Silverman, D. Ringe
Date :  19 Oct 10  (Deposition) - 01 Dec 10  (Release) - 11 May 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Pmp, Sadfa, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. Liu, E. Pozharski, M. Fu, R. B. Silverman, D. Ringe
Mechanism Of Inactivation Of Escherichia Coli Aspartate Aminotransferase By (S)-4-Amino-4, 5-Dihydro-2-Furancarboxylic Acid .
Biochemistry V. 49 10507 2010
PubMed-ID: 21033689  |  Reference-DOI: 10.1021/BI101325Z

(-) Compounds

Molecule 1 - ASPARTATE AMINOTRANSFERASE
    ChainsA
    EC Number2.6.1.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneASPC
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 17)

Asymmetric Unit (4, 17)
No.NameCountTypeFull Name
1GOL11Ligand/IonGLYCEROL
2PJ71Ligand/Ion4-AMINOFURAN-2-CARBOXYLIC ACID
3PMP1Ligand/Ion4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
4SO44Ligand/IonSULFATE ION
Biological Unit 1 (4, 34)
No.NameCountTypeFull Name
1GOL22Ligand/IonGLYCEROL
2PJ72Ligand/Ion4-AMINOFURAN-2-CARBOXYLIC ACID
3PMP2Ligand/Ion4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
4SO48Ligand/IonSULFATE ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:34 , TYR A:65 , TRP A:130 , ASN A:183 , TYR A:214 , LYS A:246 , ARG A:280 , PHE A:348 , ARG A:374 , GOL A:406 , PMP A:600 , HOH A:741 , HOH A:822BINDING SITE FOR RESIDUE PJ7 A 500
02AC2SOFTWARETYR A:65 , GLY A:102 , GLY A:103 , THR A:104 , TRP A:130 , ASN A:183 , ASP A:211 , TYR A:214 , SER A:243 , SER A:245 , LYS A:246 , ARG A:254 , PJ7 A:500 , HOH A:822BINDING SITE FOR RESIDUE PMP A 600
03AC3SOFTWAREASP A:11 , ILE A:68 , ALA A:277 , ARG A:280 , HOH A:448 , HOH A:482 , HOH A:513 , HOH A:534 , HOH A:675BINDING SITE FOR RESIDUE GOL A 397
04AC4SOFTWAREALA A:218 , ARG A:315 , GLN A:316 , GLN A:319 , GOL A:399 , HOH A:569 , HOH A:627BINDING SITE FOR RESIDUE GOL A 398
05AC5SOFTWAREARG A:315 , GLN A:316 , GOL A:398 , HOH A:516BINDING SITE FOR RESIDUE GOL A 399
06AC6SOFTWAREGLY A:216 , GLY A:220 , LEU A:221 , GLU A:308 , LEU A:311 , THR A:312 , ARG A:315 , GOL A:405 , HOH A:566BINDING SITE FOR RESIDUE GOL A 400
07AC7SOFTWAREPRO A:72 , GLY A:75 , ARG A:76 , GLN A:79 , ALA A:95 , ARG A:96 , THR A:97 , HOH A:424 , HOH A:727 , HOH A:755 , HOH A:816BINDING SITE FOR RESIDUE GOL A 401
08AC8SOFTWAREASN A:4 , TYR A:150 , LEU A:353 , SER A:372 , HOH A:551 , HOH A:589 , HOH A:697BINDING SITE FOR RESIDUE GOL A 402
09AC9SOFTWARETYR A:55 , LEU A:303 , HOH A:512 , HOH A:666 , HOH A:827BINDING SITE FOR RESIDUE GOL A 403
10BC1SOFTWAREPRO A:189 , THR A:190 , LEU A:191 , ARG A:219 , ASN A:345 , HOH A:428 , HOH A:632 , HOH A:770BINDING SITE FOR RESIDUE GOL A 404
11BC2SOFTWAREGLY A:220 , LEU A:221 , GLU A:222 , GLU A:223 , GOL A:400 , HOH A:686 , HOH A:710BINDING SITE FOR RESIDUE GOL A 405
12BC3SOFTWAREILE A:13 , GLY A:34 , ARG A:280 , PJ7 A:500 , HOH A:509 , HOH A:549 , HOH A:745BINDING SITE FOR RESIDUE GOL A 406
13BC4SOFTWAREGLY A:67 , ILE A:68 , ASP A:69 , HOH A:743BINDING SITE FOR RESIDUE GOL A 407
14BC5SOFTWAREPRO A:72 , ARG A:76 , HOH A:440BINDING SITE FOR RESIDUE SO4 A 408
15BC6SOFTWAREARG A:122 , ARG A:360 , HOH A:430BINDING SITE FOR RESIDUE SO4 A 409
16BC7SOFTWAREARG A:96 , LYS A:276 , HOH A:481 , HOH A:559 , HOH A:662BINDING SITE FOR RESIDUE SO4 A 410
17BC8SOFTWARELYS A:134 , ASN A:138 , GLU A:143 , VAL A:144 , ARG A:145 , HOH A:656BINDING SITE FOR RESIDUE SO4 A 411

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3PAA)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Asn A:127 -Pro A:128
2Asn A:183 -Pro A:184

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3PAA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3PAA)

(-) Exons   (0, 0)

(no "Exon" information available for 3PAA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:396
 aligned with D3H0F7_ECO44 | D3H0F7 from UniProtKB/TrEMBL  Length:396

    Alignment length:396
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390      
         D3H0F7_ECO44     1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396
               SCOP domains d3paaa_ A: Aspartate aminotransferase, AAT                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains -------------------------Aminotran_1_2-3paaA01 A:26-392                                                                                                                                                                                                                                                                                                                                                 ---- Pfam domains
         Sec.struct. author ............hhhhhhhhhhh.....ee...............hhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh..hhhhhh..eeeeeehhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhh..eeeeee.ee....eehhhhhhhhhh......eeeee...........hhhhhhhhhhhhhhhh.eeeeee.......hhhhhhhhhhhhhhhh..eeeeee......hhhhh.eeeeee..hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh...eee...hhhhhhhhhhhhhee.....eee.hhh...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3paa A   1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3PAA)

(-) Pfam Domains  (1, 1)

Asymmetric Unit

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A   (D3H0F7_ECO44 | D3H0F7)
molecular function
    GO:0004069    L-aspartate:2-oxoglutarate aminotransferase activity    Catalysis of the reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate.
    GO:0080130    L-phenylalanine:2-oxoglutarate aminotransferase activity    Catalysis of the reaction: L-phenylalanine + 2-oxoglutarate = phenylpyruvate + L-glutamate.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0030170    pyridoxal phosphate binding    Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
    GO:0008483    transaminase activity    Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0006520    cellular amino acid metabolic process    The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.

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 Related Entries

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        D3H0F7_ECO44 | D3H0F73pa9

(-) Related Entries Specified in the PDB File

3pa9