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(-) Description

Title :  CRYSTAL STRUCTURE OF ABCE1 OF SULFOLUBUS SOLFATARICUS (-FES DOMAIN)
 
Authors :  D. Barthelme, R. Tampe
Date :  27 Sep 10  (Deposition) - 02 Feb 11  (Release) - 02 Feb 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Atp Binding Cassette Protein, Hydrolase, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Barthelme, S. Dinkelaker, S. -V. Albers, P. Londei, U. Ermler, R. Tampe
Ribosome Recycling In Archaea A Mechanistic Link Between Fe Cluster Biosynthesis And Conformational Switch Of Twin-Atpase Abce1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RNASE L INHIBITOR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 76-600
    Gene: SSO0287
    Mutation: YES
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1ADP4Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG4Ligand/IonMAGNESIUM ION
3PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3PO41Ligand/IonPHOSPHATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3PO4-1Ligand/IonPHOSPHATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:382 , GLN A:411 , ADP A:615 , HOH A:3003 , HOH A:3024 , HOH A:3243BINDING SITE FOR RESIDUE MG A 613
2AC2SOFTWARETHR A:113 , GLN A:167 , ADP A:616 , HOH A:3028 , HOH A:3064 , HOH A:3230BINDING SITE FOR RESIDUE MG A 614
3AC3SOFTWARELEU A:353 , PHE A:356 , ASN A:377 , GLY A:378 , ILE A:379 , GLY A:380 , LYS A:381 , THR A:382 , THR A:383 , GLU A:538 , MG A:613 , HOH A:3003 , HOH A:3024 , HOH A:3059 , HOH A:3074 , HOH A:3216 , HOH A:3243 , HOH A:3270 , HOH A:3422 , ALA B:568 , GLU B:569BINDING SITE FOR RESIDUE ADP A 615
4AC4SOFTWARETYR A:83 , PHE A:88 , ASN A:108 , GLY A:109 , VAL A:110 , GLY A:111 , LYS A:112 , THR A:113 , THR A:114 , SER A:289 , MG A:614 , HOH A:3028 , HOH A:3064 , HOH A:3189 , HOH A:3230 , HOH A:3231 , HOH A:3330BINDING SITE FOR RESIDUE ADP A 616
5AC5SOFTWAREGLN A:411 , GLN A:485 , SER A:488 , TYR A:489 , HOH A:3282BINDING SITE FOR RESIDUE PO4 A 1
6AC6SOFTWARETHR B:382 , GLN B:411 , GLN B:485 , ADP B:615 , HOH B:3026 , HOH B:3209 , HOH B:3242BINDING SITE FOR RESIDUE MG B 613
7AC7SOFTWARETHR B:113 , GLN B:167 , ADP B:616 , HOH B:3001 , HOH B:3005 , HOH B:3018BINDING SITE FOR RESIDUE MG B 614
8AC8SOFTWARELEU B:353 , GLY B:354 , PHE B:356 , ASN B:377 , GLY B:378 , ILE B:379 , GLY B:380 , LYS B:381 , THR B:382 , THR B:383 , GLU B:538 , MG B:613 , HOH B:3026 , HOH B:3093 , HOH B:3108 , HOH B:3209 , HOH B:3242 , HOH B:3283BINDING SITE FOR RESIDUE ADP B 615
9AC9SOFTWARETYR B:83 , PHE B:88 , ASN B:108 , GLY B:109 , VAL B:110 , GLY B:111 , LYS B:112 , THR B:113 , THR B:114 , SER B:289 , MG B:614 , HOH B:3001 , HOH B:3018 , HOH B:3030 , HOH B:3145 , HOH B:3205BINDING SITE FOR RESIDUE ADP B 616

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OZX)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Thr A:400 -Pro A:401
2Thr B:400 -Pro B:401

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OZX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OZX)

(-) Exons   (0, 0)

(no "Exon" information available for 3OZX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:514
 aligned with Q980K5_SULSO | Q980K5 from UniProtKB/TrEMBL  Length:600

    Alignment length:524
                                    85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595    
         Q980K5_SULSO    76 EGEVIHRYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDEPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDEPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQKERGDYYSMVLST 599
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee......eee........eeeeee.....hhhhhhhhhh..............hhhhhhhhhh...hhhhhhhhhh....eeee....hhhhh....hhhhhhhhhh...hhhhhhhhh.hhhhh..hhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhh...eeeee..hhhhhhhhh.eeeeeeee...eeee...eehhhhhhhhhhhee....ee...........----------..eeeee..eeeee..eeeee..eeee...eeeee.....hhhhhhhhhh.........ee.....eeee..........hhhhhhhhhh.......hhhhhhh....hhhhh...hhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhh.eeeeeeee...eeee...eehhhhhhhhhhhhh.eeee......eeee...hhhhhhhhhhh..eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ozx A  76 EGEVIHRYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLK----------LKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQKERGDYYSMVLST 599
                                    85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325   |     -    |  345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595    
                                                                                                                                                                                                                                                                                       329        340                                                                                                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:515
 aligned with Q980K5_SULSO | Q980K5 from UniProtKB/TrEMBL  Length:600

    Alignment length:525
                                    85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595     
         Q980K5_SULSO    76 EGEVIHRYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDEPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDEPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQKERGDYYSMVLSTQ 600
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ABC_tran-3ozxB01 B:382-488                                                                                 ---------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ABC_tran-3ozxB02 B:382-488                                                                                 ---------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ABC_tran-3ozxB03 B:382-488                                                                                 ---------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ABC_tran-3ozxB04 B:382-488                                                                                 ---------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author ...eeee......eee........eeeeee.....hhhhhhhhhh..............hhhhhhhhh....hhhhhhhhhh....eeee..hhhhhhh....hhhhhhhhhh...hhhhhhhhh.hhhhh..hhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhh...eeeee..hhhhhhhhh.eeeeeeee...eeee...eehhhhhhhhhhheehhhhee...........----------..eeeee..eeeee..eeeee..eeee...eeeee.....hhhhhhhhhh.........ee.....eeee..........hhhhhhhhhh.......hhhhhhh....hhhhh...hhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhh.eeeeeeee...eeee....hhhhhhhhhhhhhh..eee......eee....hhhhhhhhhhh..eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ozx B  76 EGEVIHRYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLK----------LKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQKERGDYYSMVLSTQ 600
                                    85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325   |     -    |  345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595     
                                                                                                                                                                                                                                                                                       329        340
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OZX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OZX)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: P-loop_NTPase (1112)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q980K5_SULSO | Q980K5)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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  3ozx
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 Related Entries

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