3OVR - JenaLib

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:35 , ASP A:37 , HIS A:70 , ASP A:175 , 5SP A:230	BINDING SITE FOR RESIDUE FE2 A 229
02	AC2	SOFTWARE	SER A:10 , LEU A:12 , HIS A:35 , ASP A:37 , MET A:39 , HIS A:70 , MET A:72 , PRO A:145 , GLY A:146 , PHE A:147 , GLY A:149 , ASP A:175 , GLY A:176 , GLY A:177 , GLY A:197 , SER A:198 , FE2 A:229 , HOH A:245 , HOH A:247 , HOH A:258 , HOH A:271 , HOH A:283	BINDING SITE FOR RESIDUE 5SP A 230
03	AC3	SOFTWARE	TRP A:131	BINDING SITE FOR RESIDUE XPE A 231
04	AC4	SOFTWARE	GLY A:4 , LYS A:6 , ASP A:32 , ASP A:171 , MET A:193	BINDING SITE FOR RESIDUE XPE A 232
05	AC5	SOFTWARE	ARG A:58 , GLN A:63 , PHE A:66 , GLY A:87 , ALA A:88 , ASN A:89 , GLY A:112 , LYS A:114 , HOH A:343	BINDING SITE FOR RESIDUE XPE A 233
06	AC6	SOFTWARE	PRO A:158 , HIS A:161 , TRP A:162 , GLN A:166 , GLU A:188	BINDING SITE FOR RESIDUE XPE A 234
07	AC7	SOFTWARE	HIS B:35 , ASP B:37 , HIS B:70 , ASP B:175 , 5SP B:230	BINDING SITE FOR RESIDUE FE2 B 229
08	AC8	SOFTWARE	SER B:10 , LEU B:12 , HIS B:35 , ASP B:37 , MET B:39 , HIS B:70 , MET B:72 , PRO B:145 , GLY B:146 , PHE B:147 , GLY B:148 , GLY B:149 , ASP B:175 , GLY B:176 , GLY B:177 , GLY B:197 , SER B:198 , FE2 B:229 , HOH B:242 , HOH B:246 , HOH B:263 , HOH B:319 , HOH B:321	BINDING SITE FOR RESIDUE 5SP B 230
09	AC9	SOFTWARE	GLY B:4 , LYS B:6 , ASP B:32 , ASP B:171	BINDING SITE FOR RESIDUE XPE B 231
10	BC1	SOFTWARE	GLY B:122 , THR B:123 , TYR B:127	BINDING SITE FOR RESIDUE XPE B 232
11	BC2	SOFTWARE	ALA B:88 , ASN B:89 , GLY B:112	BINDING SITE FOR RESIDUE XPE B 233

SS Bonds (1, 1)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:221
 aligned with RPE_HUMAN | Q96AT9 from UniProtKB/Swiss-Prot  Length:228

    Alignment length:221
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223 
            RPE_HUMAN     4 GCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKR 224
               SCOP domains d3ovra_ A: automated matches                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.....hhhhhhhhhhhhhhh....eeeeee..........hhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhhh..eeeee.hhh.hhhhhhhhhhhh..eeeeee....hhhhhhhhhhhh.eeeee...........hhhhhhhhhhhhhhh...eeeee......hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------RIBUL_P_3_EPIME-----------------------------------------------------------------------------------------RIBUL_P_3_EPIMER_2     ---------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ovr A   4 GCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKR 224
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223

Chain B from PDB  Type:PROTEIN  Length:220
 aligned with RPE_HUMAN | Q96AT9 from UniProtKB/Swiss-Prot  Length:228

    Alignment length:220
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223
            RPE_HUMAN     4 GCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQK 223
               SCOP domains d3ovrb_ B: automated matches                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --Ribul_P_3_epim-3ovrB01 B:6-204                                                                                                                                                                         ------------------- Pfam domains (1)
           Pfam domains (2) --Ribul_P_3_epim-3ovrB02 B:6-204                                                                                                                                                                         ------------------- Pfam domains (2)
         Sec.struct. author ..eeee.....hhhhhhhhhhhhhhh....eeeeee..........hhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhh..eeeeee....hhhhhh.hhhhh.eeeee...........hhhhhhhhhhhhhhh...eeeee......hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------RIBUL_P_3_EPIME-----------------------------------------------------------------------------------------RIBUL_P_3_EPIMER_2     --------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ovr B   4 GCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQK 223
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (1, 2)

Gene Ontology (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (RPE_HUMAN | Q96AT9)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	Catalysis of a reaction that alters the configuration of one or more chiral centers in a carbohydrate molecule.
	GO:0004750	ribulose-phosphate 3-epimerase activity	Catalysis of the reaction: D-ribulose 5-phosphate = D-xylulose 5-phosphate.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0044262	cellular carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0019323	pentose catabolic process	The chemical reactions and pathways resulting in the breakdown of a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.
	GO:0006098	pentose-phosphate shunt	The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses.
	GO:0009052	pentose-phosphate shunt, non-oxidative branch	The branch of the pentose-phosphate shunt which does not involve oxidation reactions. It comprises a series of sugar phosphate interconversions, starting with ribulose 5-P and producing fructose 6-P and glyceraldehyde 3-P.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

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	Cis Peptide Bonds
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	3ovr
		Family and Domain Information	:	ProDom \| SYSTERS
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	RPE_HUMAN \| Q96AT9
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	5.1.3.1
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 11)

Sites (11, 11)