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Asym./Biol. Unit (Jmol Viewer)

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Title :   CRYSTAL STRUCTURE OF THE FHAA FHA DOMAIN COMPLEXED WITH THE INTRACELLULAR DOMAIN OF RV3910

Authors :   C. L. Gee, T. Alber

Date :   15 Sep 10 (Deposition) - 08 Feb 12 (Release) - 08 Feb 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.71

Chains :   Asym./Biol. Unit : A,B

Keywords :   Peptidoglycan, Ser/Thr Kinase, Pseudokinase, Fha Domain, Regulation, Phosphorylation, Membrane Associated Intracellular, Protein Binding- Transferase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. L. Gee, K. G. Papavinasasundaram, S. R. Blair, C. E. Baer, A. M. Falick, D. S. King, J. E. Griffin, H. Venghatakrishnan, A. Zukauskas, J. R. Wei, R. K. Dhiman, D. C. Crick, E. J. Rubin, C. M. Sassetti, T. Alber
A Phosphorylated Pseudokinase Complex Controls Cell Wall Synthesis In Mycobacteria
Sci. Signal. V. 5 Ra7 2012
PubMed-ID: 22275220 | Reference-DOI: 10.1126/SCISIGNAL.2002525

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN TB39.8
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28
	Expression System Strain	:	BL21(DE3)CODON PLUS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 390-524
	Gene	:	RV0020C, TB39.8
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	83332
	Strain	:	H37RV

Molecule 2 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN
	Chains	:	B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PDEST15
	Expression System Strain	:	BL21(DE3) CODON PLUS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 676-963
	Gene	:	MT4029, RV3910
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	83332
	Strain	:	H37RV

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 2)

No.	Name	Count	Type	Full Name
1	MN	1	Ligand/Ion	MANGANESE (II) ION
2	TPO	1	Mod. Amino Acid	PHOSPHOTHREONINE

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR B:49 , ASP B:52 , HOH B:363	BINDING SITE FOR RESIDUE MN B 283

(no "SS Bond" information available for 3OUN)

Asymmetric/Biological Unit

No.	Residues
1	Pro B:39	-	Pro B:40

(no "SAP(SNP)/Variant" information available for 3OUN)

Asymmetric/Biological Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FHA_DOMAIN	PS50006	Forkhead-associated (FHA) domain profile.	FHAA_MYCTU	455-504	1	A:39-88

(no "Exon" information available for 3OUN)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:91
 aligned with FHAA_MYCTU | P71590 from UniProtKB/Swiss-Prot  Length:527

    Alignment length:91
                                   444       454       464       474       484       494       504       514       524 
           FHAA_MYCTU   435 SVTLQLDDGSGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTVNNAPVQEWQLADGDVIRLGHSEIIVR 525
               SCOP domains d3ouna_ A: automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eee...eeeeee......ee..........eeeee....eeeee.......ee..ee..eee.....eeee..eeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------FHA_DOMAIN  PDB: A:39-88 UniProt: 455-504         --------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 3oun A  19 SVTLQLDDGSGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTVNNAPVQEWQLADGDVIRLGHSEIIVR 109
                                    28        38        48        58        68        78        88        98       108

Chain B from PDB  Type:PROTEIN  Length:257
 aligned with MVINL_MYCTO | P9WJK2 from UniProtKB/Swiss-Prot  Length:1184

    Alignment length:257
                                   707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       867       877       887       897       907       917       927       937       947       
          MVINL_MYCTO   698 QLVPGARIANGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPATMPDANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIRSASTLLNLMQQATAVADRTEVLGPID 954
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee....eeeeee.......eeeeeee....eeeeeee.......hhhhhhhhhhhhhhhhh........eeeeeee..eeeeeee...eeehhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeee....eee.........hhhhhhhhhhhhhhhhhhh.........................hhhhhh...hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oun B  17 QLVPGARIANGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPATMPDANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIRSASTLLNLMQQATAVADRtEVLGPID 273
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       
                                                                                                                                                                                                                                                                                   266-TPO

Chain B from PDB  Type:PROTEIN  Length:257
 aligned with MVINL_MYCTU | P9WJK3 from UniProtKB/Swiss-Prot  Length:1184

    Alignment length:257
                                   707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       867       877       887       897       907       917       927       937       947       
          MVINL_MYCTU   698 QLVPGARIANGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPATMPDANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIRSASTLLNLMQQATAVADRTEVLGPID 954
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee....eeeeee.......eeeeeee....eeeeeee.......hhhhhhhhhhhhhhhhh........eeeeeee..eeeeeee...eeehhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeee....eee.........hhhhhhhhhhhhhhhhhhh.........................hhhhhh...hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oun B  17 QLVPGARIANGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPATMPDANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIRSASTLLNLMQQATAVADRtEVLGPID 273
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       
                                                                                                                                                                                                                                                                                   266-TPO

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: SMAD/FHA domain (62)

Superfamily: SMAD/FHA domain (62)

Family: automated matches (9)

Protein domain: automated matches (9)

Mycobacterium tuberculosis [TaxId: 1773] (3)

d3ouna_

(no "CATH Domain" information available for 3OUN)

(no "Pfam Domain" information available for 3OUN)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (FHAA_MYCTU | P71590)


GO:0005618	cell wall	The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Chain B (MVINL_MYCTO | P9WJK2)


GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain B (MVINL_MYCTU | P9WJK3)


GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Pro B:39 - Pro B:40	[ RasMol ]

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	FHAA_MYCTU \| P71590
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	MVINL_MYCTO \| P9WJK2
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	MVINL_MYCTU \| P9WJK3
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	MVINL_MYCTU \| P9WJK3
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UniProtKB/Swiss-Prot
	FHAA_MYCTU \| P71590	:	2lc0 2lc1 3po8 3poa
	MVINL_MYCTO \| P9WJK2	:	3otv 3ouk 3uqc
	MVINL_MYCTU \| P9WJK3	:	3otv 3ouk 3uqc

3otv	THE INTRACELLULAR DOMAIN OF RV3910 ALONE
3ouk	THE INTRACELLULAR DOMAIN OF RV3910 ALONE
3uqc

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 2)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 11)

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