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(-) Description

Title :  CRYSTAL STRUCTURE OF ISOCITRATE LYASE FROM BRUCELLA MELITENSIS, BOUND TO THE PRODUCT MIMIC MALONATE
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  02 Sep 10  (Deposition) - 15 Sep 10  (Release) - 29 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Ssgcid, Lyase, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Ssgcid, A. Gardberg, T. Edwards, B. Staker, L. Stewart
Crystal Structure Of Isocitrate Lyase From Brucella Melitensis, Bound To The Product Mimic Malonate
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ISOCITRATE LYASE
    Chains: A, B, C, D
    EC Number: 4.1.3.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: AVA0421
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BAB1_1631
    Organism Scientific: BRUCELLA MELITENSIS BIOVAR ABORTUS
    Organism Taxid: 359391
    Strain: 2308

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 24)

Asymmetric/Biological Unit (3, 24)
No.NameCountTypeFull Name
1EDO11Ligand/Ion1,2-ETHANEDIOL
2MLA4Ligand/IonMALONIC ACID
3NA9Ligand/IonSODIUM ION

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:101 , CYS A:185 , HIS A:187 , ASN A:309 , SER A:311 , SER A:313 , THR A:343 , LEU A:344 , HOH A:430 , HOH A:464 , HOH A:560BINDING SITE FOR RESIDUE MLA A 440
02AC2SOFTWAREALA A:92 , ARG A:116 , HOH A:498 , HOH A:547 , ALA B:92 , HOH B:998 , HOH B:1141BINDING SITE FOR RESIDUE EDO A 450
03AC3SOFTWAREASP A:157 , SER D:103 , HOH D:534 , HOH D:917BINDING SITE FOR RESIDUE NA A 460
04AC4SOFTWAREGLY A:190 , LYS A:191 , ALA A:228 , LYS A:229 , LEU A:230 , HOH A:534 , GLU B:417BINDING SITE FOR RESIDUE EDO A 465
05AC5SOFTWAREMET A:71 , ARG A:75 , ALA A:124 , GLU A:128 , ARG A:391 , GLU A:392BINDING SITE FOR RESIDUE EDO A 475
06AC6SOFTWAREASP A:147 , HOH A:430 , HOH A:464 , HOH A:580 , HOH A:945 , HOH A:949BINDING SITE FOR RESIDUE NA A 501
07AC7SOFTWARECYS B:185 , HIS B:187 , ASN B:309 , SER B:311 , SER B:313 , THR B:343 , HOH B:430 , HOH B:431 , HOH B:473 , HOH B:542BINDING SITE FOR RESIDUE MLA B 440
08AC8SOFTWAREASP B:157 , HOH B:1117 , HOH B:1118 , SER C:103 , HOH C:537BINDING SITE FOR RESIDUE NA B 460
09AC9SOFTWAREGLU A:417 , GLY B:189 , GLY B:190 , LYS B:191 , ALA B:227 , ALA B:228 , LYS B:229 , LEU B:230BINDING SITE FOR RESIDUE EDO B 465
10BC1SOFTWAREMET B:71 , ARG B:75 , ILE B:127 , GLU B:128 , ARG B:391 , GLU B:392BINDING SITE FOR RESIDUE EDO B 475
11BC2SOFTWAREASP B:147 , HOH B:430 , HOH B:431 , HOH B:432 , HOH B:434 , HOH B:542BINDING SITE FOR RESIDUE NA B 501
12BC3SOFTWAREASP C:101 , CYS C:185 , HIS C:187 , ASN C:309 , SER C:311 , SER C:313 , THR C:343 , HOH C:431 , HOH C:527 , HOH C:550 , HOH C:947BINDING SITE FOR RESIDUE MLA C 440
13BC4SOFTWARESER B:103 , HOH B:697 , HOH B:961 , ASP C:157BINDING SITE FOR RESIDUE NA C 460
14BC5SOFTWAREGLY C:189 , GLY C:190 , LYS C:191 , ALA C:227 , LYS C:229 , LEU C:230 , HOH C:502BINDING SITE FOR RESIDUE EDO C 465
15BC6SOFTWARELEU C:193 , ASP C:239 , LYS C:258 , PRO C:263 , ARG C:267 , HOH C:437 , HOH C:592BINDING SITE FOR RESIDUE EDO C 470
16BC7SOFTWAREMET C:71 , ARG C:75 , ALA C:124 , ILE C:127 , GLU C:128 , ARG C:391 , GLU C:392BINDING SITE FOR RESIDUE EDO C 475
17BC8SOFTWAREASP C:147 , HOH C:431 , HOH C:527 , HOH C:635 , HOH C:946 , HOH C:947BINDING SITE FOR RESIDUE NA C 501
18BC9SOFTWARECYS D:185 , HIS D:187 , ASN D:309 , SER D:311 , SER D:313 , THR D:343 , LEU D:344 , HOH D:430 , HOH D:529 , HOH D:919BINDING SITE FOR RESIDUE MLA D 440
19CC1SOFTWAREARG C:116 , HOH C:658 , HOH C:878 , HOH C:1018 , ARG D:116 , HOH D:558BINDING SITE FOR RESIDUE EDO C 450
20CC2SOFTWARESER A:103 , HOH A:742 , HOH A:1146 , ASP D:157BINDING SITE FOR RESIDUE NA D 460
21CC3SOFTWAREGLU C:417 , GLY D:189 , GLY D:190 , LYS D:191 , ALA D:227 , ALA D:228 , LYS D:229 , LEU D:230BINDING SITE FOR RESIDUE EDO D 465
22CC4SOFTWAREMET D:71 , ARG D:75 , ALA D:124 , GLU D:128 , ARG D:391 , GLU D:392BINDING SITE FOR RESIDUE EDO D 475
23CC5SOFTWAREASP D:147 , HOH D:430 , HOH D:431 , HOH D:448 , HOH D:919 , HOH D:948BINDING SITE FOR RESIDUE NA D 501
24CC6SOFTWAREVAL C:243 , HOH C:580 , HOH C:666 , HOH C:1093 , HOH C:1120 , HOH D:1061BINDING SITE FOR RESIDUE NA C 430

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OQ8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3OQ8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OQ8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OQ8)

(-) Exons   (0, 0)

(no "Exon" information available for 3OQ8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:424
 aligned with Q2YQA0_BRUA2 | Q2YQA0 from UniProtKB/TrEMBL  Length:429

    Alignment length:424
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422    
         Q2YQA0_BRUA2     3 DFYSLIPSAPKGRFDGIERAHTAEDVKRLRGSVEIKYSLAEMGANRLWKLIHEEDFVNALGALSGNQAMQMVRAGLKAIYLSGWQVAADANTASAMYPDQSLYPANAGPELAKRINRTLQRADQIETAEGKGLSVDTWFAPIVADAEAGFGGPLDAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLIVARTDAEAAKLLTSDIDERDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAPYCDLIWMETSKPDLAQARRFAEAVHKAHPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFHQLNYGMFELARGYKDRQMAAYSELQQAEFAAEADGYTATKHQREVGTGYFDAVSLAITGGQSSTTAMKESTETAQFKP 426
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh...............hhhhhhhhh......hhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhh....eeehhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhh...eeeee..hhhhh........ee.hhhhhhhhhhhhhhhhhhhh...eeeeee......ee.......hhhhh...........ee...hhhhhhhhhhhhhhhh.eeee.....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...........hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oq8 A   3 DFYSLIPSAPKGRFDGIERAHTAEDVKRLRGSVEIKYSLAEMGANRLWKLIHEEDFVNALGALSGNQAMQMVRAGLKAIYLSGWQVAADANTASAMYPDQSLYPANAGPELAKRINRTLQRADQIETAEGKGLSVDTWFAPIVADAEAGFGGPLDAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLIVARTDAEAAKLLTSDIDERDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAPYCDLIWMETSKPDLAQARRFAEAVHKAHPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFHQLNYGMFELARGYKDRQMAAYSELQQAEFAAEADGYTATKHQREVGTGYFDAVSLAITGGQSSTTAMKESTETAQFKP 426
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422    


Chain B from PDB  Type:PROTEIN  Length:422
 aligned with Q2YQA0_BRUA2 | Q2YQA0 from UniProtKB/TrEMBL  Length:429

    Alignment length:422
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422  
         Q2YQA0_BRUA2     3 DFYSLIPSAPKGRFDGIERAHTAEDVKRLRGSVEIKYSLAEMGANRLWKLIHEEDFVNALGALSGNQAMQMVRAGLKAIYLSGWQVAADANTASAMYPDQSLYPANAGPELAKRINRTLQRADQIETAEGKGLSVDTWFAPIVADAEAGFGGPLDAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLIVARTDAEAAKLLTSDIDERDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAPYCDLIWMETSKPDLAQARRFAEAVHKAHPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFHQLNYGMFELARGYKDRQMAAYSELQQAEFAAEADGYTATKHQREVGTGYFDAVSLAITGGQSSTTAMKESTETAQF 424
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh...............hhhhhhhhh......hhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhh....eeehhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhh...eeeee..hhhhh........ee.hhhhhhhhhhhhhhhhhhhh...eeeeee......ee.......hhhhh...........ee...hhhhhhhhhhhhhhhh.eeee.....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...........hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oq8 B   3 DFYSLIPSAPKGRFDGIERAHTAEDVKRLRGSVEIKYSLAEMGANRLWKLIHEEDFVNALGALSGNQAMQMVRAGLKAIYLSGWQVAADANTASAMYPDQSLYPANAGPELAKRINRTLQRADQIETAEGKGLSVDTWFAPIVADAEAGFGGPLDAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLIVARTDAEAAKLLTSDIDERDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAPYCDLIWMETSKPDLAQARRFAEAVHKAHPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFHQLNYGMFELARGYKDRQMAAYSELQQAEFAAEADGYTATKHQREVGTGYFDAVSLAITGGQSSTTAMKESTETAQF 424
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422  


Chain C from PDB  Type:PROTEIN  Length:423
 aligned with Q2YQA0_BRUA2 | Q2YQA0 from UniProtKB/TrEMBL  Length:429

    Alignment length:423
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422   
         Q2YQA0_BRUA2     3 DFYSLIPSAPKGRFDGIERAHTAEDVKRLRGSVEIKYSLAEMGANRLWKLIHEEDFVNALGALSGNQAMQMVRAGLKAIYLSGWQVAADANTASAMYPDQSLYPANAGPELAKRINRTLQRADQIETAEGKGLSVDTWFAPIVADAEAGFGGPLDAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLIVARTDAEAAKLLTSDIDERDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAPYCDLIWMETSKPDLAQARRFAEAVHKAHPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFHQLNYGMFELARGYKDRQMAAYSELQQAEFAAEADGYTATKHQREVGTGYFDAVSLAITGGQSSTTAMKESTETAQFK 425
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh...............hhhhhhhhh......hhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhh....eeehhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhh..eeeee..hhhhh........ee.hhhhhhhhhhhhhhhhhhhh...eeeeee......ee.......hhhhh...........ee...hhhhhhhhhhhhhhhh.eeee.....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...........hhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oq8 C   3 DFYSLIPSAPKGRFDGIERAHTAEDVKRLRGSVEIKYSLAEMGANRLWKLIHEEDFVNALGALSGNQAMQMVRAGLKAIYLSGWQVAADANTASAMYPDQSLYPANAGPELAKRINRTLQRADQIETAEGKGLSVDTWFAPIVADAEAGFGGPLDAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLIVARTDAEAAKLLTSDIDERDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAPYCDLIWMETSKPDLAQARRFAEAVHKAHPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFHQLNYGMFELARGYKDRQMAAYSELQQAEFAAEADGYTATKHQREVGTGYFDAVSLAITGGQSSTTAMKESTETAQFK 425
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422   


Chain D from PDB  Type:PROTEIN  Length:423
 aligned with Q2YQA0_BRUA2 | Q2YQA0 from UniProtKB/TrEMBL  Length:429

    Alignment length:423
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422   
         Q2YQA0_BRUA2     3 DFYSLIPSAPKGRFDGIERAHTAEDVKRLRGSVEIKYSLAEMGANRLWKLIHEEDFVNALGALSGNQAMQMVRAGLKAIYLSGWQVAADANTASAMYPDQSLYPANAGPELAKRINRTLQRADQIETAEGKGLSVDTWFAPIVADAEAGFGGPLDAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLIVARTDAEAAKLLTSDIDERDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAPYCDLIWMETSKPDLAQARRFAEAVHKAHPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFHQLNYGMFELARGYKDRQMAAYSELQQAEFAAEADGYTATKHQREVGTGYFDAVSLAITGGQSSTTAMKESTETAQFK 425
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ICL-3oq8D01 D:240-424                                                                                                                                                                    - Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ICL-3oq8D02 D:240-424                                                                                                                                                                    - Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ICL-3oq8D03 D:240-424                                                                                                                                                                    - Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ICL-3oq8D04 D:240-424                                                                                                                                                                    - Pfam domains (4)
           Pfam domains (5) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ICL-3oq8D05 D:240-424                                                                                                                                                                    - Pfam domains (5)
           Pfam domains (6) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ICL-3oq8D06 D:240-424                                                                                                                                                                    - Pfam domains (6)
           Pfam domains (7) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ICL-3oq8D07 D:240-424                                                                                                                                                                    - Pfam domains (7)
           Pfam domains (8) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ICL-3oq8D08 D:240-424                                                                                                                                                                    - Pfam domains (8)
         Sec.struct. author .....................hhhhhhhhh......hhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhh....eeehhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhh..eeeee..hhhhh........ee.hhhhhhhhhhhhhhhhhhhh...eeeeee......ee....hhhhhhhh...........ee...hhhhhhhhhhhhhhhh.eeee.....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...........hhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oq8 D   3 DFYSLIPSAPKGRFDGIERAHTAEDVKRLRGSVEIKYSLAEMGANRLWKLIHEEDFVNALGALSGNQAMQMVRAGLKAIYLSGWQVAADANTASAMYPDQSLYPANAGPELAKRINRTLQRADQIETAEGKGLSVDTWFAPIVADAEAGFGGPLDAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLIVARTDAEAAKLLTSDIDERDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAPYCDLIWMETSKPDLAQARRFAEAVHKAHPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFHQLNYGMFELARGYKDRQMAAYSELQQAEFAAEADGYTATKHQREVGTGYFDAVSLAITGGQSSTTAMKESTETAQFK 425
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OQ8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OQ8)

(-) Pfam Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Clan: PK_TIM (63)
(-)
Family: ICL (3)
(-)
Brucella abortus (strain 2308) (2)
1aICL-3oq8D01D:240-424
1bICL-3oq8D02D:240-424
1cICL-3oq8D03D:240-424
1dICL-3oq8D04D:240-424
1eICL-3oq8D05D:240-424
1fICL-3oq8D06D:240-424
1gICL-3oq8D07D:240-424
1hICL-3oq8D08D:240-424

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (Q2YQA0_BRUA2 | Q2YQA0)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0004451    isocitrate lyase activity    Catalysis of the reaction: isocitrate = glyoxylate + succinate.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
    GO:0019752    carboxylic acid metabolic process    The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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        Q2YQA0_BRUA2 | Q2YQA0: 3e5b 3eol 3p0x

(-) Related Entries Specified in the PDB File

3e5b 2.4 A CRYSTAL STRUCTURE OF ISOCITRATE LYASE FROM BRUCELLA MELITENSIS
3eol 2.0A CRYSTAL STRUCTURE OF ISOCITRATE LYASE FROM BRUCELLA MELITENSIS (P43212) RELATED ID: BRABA.00014.A RELATED DB: TARGETDB