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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF MANDELATE RACEMASE/MUCONATE LACTONIZING PROTEIN FROM GEOBACILLUS SP. Y412MC10 COMPLEXED WITH MAGNESIUM/TARTRATE

Authors :   V. N. Malashkevich, Y. Patskovsky, U. Ramagopal, R. Toro, J. M. Sauder, S. K. Burley, S. C. Almo, New York Sgx Research Center For Struct Genomics (Nysgxrc)

Date :   01 Sep 10 (Deposition) - 15 Sep 10 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: A (1x),C (1x)
Biol. Unit 6: B (1x),D (1x)

Keywords :   Structural Genomics, Crystal Structure, Protein Structure Initiative, New York Structural Genomix Research Consortium, Nysgxrc, Racemase, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   V. N. Malashkevich, Y. Patskovsky, U. Ramagopal, R. Toro, J. M. Sauder S. K. Burley, S. C. Almo
Crystal Structure Ofmandelate Racemase/Muconate Lactonizing Protein From Geobacillus Sp. Y412Mc10 Complexed With Magnesium/Tartrate
To Be Published
PubMed: search

Molecule 1 - MANDELATE RACEMASE/MUCONATE LACTONIZING PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	BC-PSGX3(BC)
	Expression System Strain	:	BL21(DE3)CODON+RIL
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	192811615, GYMC10_3367
	Organism Scientific	:	GEOBACILLUS SP.
	Organism Taxid	:	481743
	Strain	:	Y412MC10

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:	A (1x)		C (1x)
Biological Unit 6 (1x)	:		B (1x)		D (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 41)

No.	Name	Count	Type	Full Name
1	MG	8	Ligand/Ion	MAGNESIUM ION
2	MSE	28	Mod. Amino Acid	SELENOMETHIONINE
3	TAR	5	Ligand/Ion	D(-)-TARTARIC ACID

Biological Unit 1 (2, 9)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	7	Mod. Amino Acid	SELENOMETHIONINE
3	TAR	2	Ligand/Ion	D(-)-TARTARIC ACID

Biological Unit 2 (2, 8)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	7	Mod. Amino Acid	SELENOMETHIONINE
3	TAR	1	Ligand/Ion	D(-)-TARTARIC ACID

Biological Unit 3 (2, 8)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	7	Mod. Amino Acid	SELENOMETHIONINE
3	TAR	1	Ligand/Ion	D(-)-TARTARIC ACID

Biological Unit 4 (2, 8)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	7	Mod. Amino Acid	SELENOMETHIONINE
3	TAR	1	Ligand/Ion	D(-)-TARTARIC ACID

Biological Unit 5 (2, 9)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	7	Mod. Amino Acid	SELENOMETHIONINE
3	TAR	2	Ligand/Ion	D(-)-TARTARIC ACID

Biological Unit 6 (2, 8)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	7	Mod. Amino Acid	SELENOMETHIONINE
3	TAR	1	Ligand/Ion	D(-)-TARTARIC ACID

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:234 , GLU A:238 , ASP A:261 , TAR A:503 , HOH A:602 , HOH A:606	BINDING SITE FOR RESIDUE MG A 500
02	AC2	SOFTWARE	ASP A:207 , GLU A:233 , GLU A:263 , TAR A:504 , HOH A:612	BINDING SITE FOR RESIDUE MG A 501
03	AC3	SOFTWARE	ASN A:210 , GLU A:234 , HIS A:237 , GLU A:263 , GLY A:264 , LEU A:265 , MG A:500 , HOH A:689 , HOH A:1392 , GLU C:238 , HOH C:1479	BINDING SITE FOR RESIDUE TAR A 503
04	AC4	SOFTWARE	ASN A:33 , TYR A:136 , LYS A:168 , LYS A:170 , ASP A:207 , ASN A:209 , GLU A:233 , GLU A:263 , HIS A:311 , TYR A:313 , GLU A:336 , MG A:501 , HOH A:645 , HOH A:1640	BINDING SITE FOR RESIDUE TAR A 504
05	AC5	SOFTWARE	GLU B:234 , GLU B:238 , ASP B:261 , HOH B:600 , HOH B:601 , HOH B:602	BINDING SITE FOR RESIDUE MG B 500
06	AC6	SOFTWARE	ASP B:207 , GLU B:233 , GLU B:263 , TAR B:503 , HOH B:1610	BINDING SITE FOR RESIDUE MG B 501
07	AC7	SOFTWARE	ASN B:33 , HIS B:39 , TYR B:136 , LYS B:168 , LYS B:170 , ASP B:207 , ASN B:209 , GLU B:233 , GLU B:263 , HIS B:311 , TYR B:313 , GLU B:336 , MG B:501 , HOH B:619 , HOH B:685 , HOH B:1610	BINDING SITE FOR RESIDUE TAR B 503
08	AC8	SOFTWARE	GLU C:234 , GLU C:238 , ASP C:261 , HOH C:600 , HOH C:601 , HOH C:603	BINDING SITE FOR RESIDUE MG C 500
09	AC9	SOFTWARE	ASP C:207 , GLU C:233 , GLU C:263 , TAR C:503 , HOH C:605	BINDING SITE FOR RESIDUE MG C 501
10	BC1	SOFTWARE	ASN C:33 , TYR C:136 , LYS C:168 , LYS C:170 , ASP C:207 , ASN C:209 , GLU C:233 , GLU C:263 , HIS C:311 , TYR C:313 , GLU C:336 , MG C:501 , HOH C:605 , HOH C:744 , HOH C:752	BINDING SITE FOR RESIDUE TAR C 503
11	BC2	SOFTWARE	GLU D:234 , GLU D:238 , ASP D:261 , HOH D:600 , HOH D:601 , HOH D:602	BINDING SITE FOR RESIDUE MG D 500
12	BC3	SOFTWARE	ASP D:207 , GLU D:233 , GLU D:234 , GLU D:263 , TAR D:503	BINDING SITE FOR RESIDUE MG D 501
13	BC4	SOFTWARE	ASN D:33 , HIS D:39 , TYR D:136 , LYS D:170 , ASP D:207 , ASN D:209 , GLU D:263 , HIS D:311 , GLU D:336 , MG D:501 , HOH D:637 , HOH D:947	BINDING SITE FOR RESIDUE TAR D 503

(no "SS Bond" information available for 3OPS)

Asymmetric Unit

No.	Residues
1	Trp A:288	-	Pro A:289
2	Trp B:288	-	Pro B:289
3	Trp C:288	-	Pro C:289
4	Trp D:288	-	Pro D:289

(no "SAP(SNP)/Variant" information available for 3OPS)

(no "PROSITE Motif" information available for 3OPS)

(no "Exon" information available for 3OPS)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:386
 aligned with D3EID5_GEOS4 | D3EID5 from UniProtKB/TrEMBL  Length:382

    Alignment length:386
                             1                                                                                                                                                                                                                                                                                                                                                                                          382   
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379  |   
         D3EID5_GEOS4     - -MNITGIQSDWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHMTPEWAEDVIGRRLLDLFDDRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLEEAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEKLDAHGLRSAPHCYGNAYGIYASGHLSAAVRNFEFVEYDDITIEGMDVSGYRIENGEIHVPATPGFGIVFDDELVTYLINRSGWS---   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeeeeeeeeeeeeee.........eeeeeeeeeeeee..eeeeee....hhhhhhhhh..hhhhh.......hhhhhhhhhhhhhhhhhhhhh.hhhhhh..........eeeeeeeeee........hhhhhhhhhhhhhhhhhhh....eeee........hhhhhhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhh....eeee.......hhhhhhhh....ee.......hhhhhhhhhhhhhhh..ee.......hhhhhhhhhhh........eee..eee..ee....ee...eeee........eehhhhhhhhhhhhheeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ops A   2 SLNITGIQSDWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHmTPEWAEDVIGRRLLDLFDDRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALmQEEAmQGYAKGQRHFKIKVGRGGRHmPLWEGTKRDIAIVRGISEVAGPAGKImIDANNAYNLNLTKEVLAALSDVNLYWLEEAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIWPGFTHWmELGEKLDAHGLRSAPHCYGNAYGIYASGHLSAAVRNFEFVEYDDITIEGmDVSGYRIENGEIHVPATPGFGIVFDDELVTYLINRSGWSEGH 387
                                    11        21        31        41        51        61  |     71        81        91       101       111       121       131       141       151|    | 161       171      |181       191       201   |   211       221       231       241       251       261       271       281       291   |   301       311       321       331       341   |   351       361       371       381      
                                                                                         64-MSE                                                                                 152-MSE|                  178-MSE                    205-MSE                                                                                   295-MSE                                           345-MSE                                      
                                                                                                                                                                                     157-MSE

Chain B from PDB  Type:PROTEIN  Length:386
 aligned with D3EID5_GEOS4 | D3EID5 from UniProtKB/TrEMBL  Length:382

    Alignment length:386
                                                                                                                                                                                                                                                                                                                                                                                                                      382     
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381|     
         D3EID5_GEOS4     2 NITGIQSDWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHMTPEWAEDVIGRRLLDLFDDRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLEEAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEKLDAHGLRSAPHCYGNAYGIYASGHLSAAVRNFEFVEYDDITIEGMDVSGYRIENGEIHVPATPGFGIVFDDELVTYLINRSGWS-----   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeeeeeeeeeeeee.........eeeeeeeeeeeee..eeeeee....hhhhhhh.....hhhhh......hhhhhhhhhhhhhhhhhhhhh.hhhhhh..........eeeeeeeeee........hhhhhhhhhhhhhhhhhh.....eeee.hhhhh..hhhhhhhhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhhh...eeee.......hhhhhhhh....ee.......hhhhhhhhhhhhhh...ee.......hhhhhhhhhhhhhh.....eee..eee..ee....ee...eeee........eehhhhhhhhhhhhheeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ops B   4 NITGIQSDWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHmTPEWAEDVIGRRLLDLFDDRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALmQEEAmQGYAKGQRHFKIKVGRGGRHmPLWEGTKRDIAIVRGISEVAGPAGKImIDANNAYNLNLTKEVLAALSDVNLYWLEEAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIWPGFTHWmELGEKLDAHGLRSAPHCYGNAYGIYASGHLSAAVRNFEFVEYDDITIEGmDVSGYRIENGEIHVPATPGFGIVFDDELVTYLINRSGWSEGHHH 389
                                    13        23        33        43        53        63|       73        83        93       103       113       123       133       143       153   |   163       173    |  183       193       203 |     213       223       233       243       253       263       273       283       293 |     303       313       323       333       343 |     353       363       373       383      
                                                                                       64-MSE                                                                                 152-MSE|                  178-MSE                    205-MSE                                                                                   295-MSE                                           345-MSE                                        
                                                                                                                                                                                   157-MSE

Chain C from PDB  Type:PROTEIN  Length:386
 aligned with D3EID5_GEOS4 | D3EID5 from UniProtKB/TrEMBL  Length:382

    Alignment length:386
                                                                                                                                                                                                                                                                                                                                                                                                                      382     
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381|     
         D3EID5_GEOS4     2 NITGIQSDWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHMTPEWAEDVIGRRLLDLFDDRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLEEAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEKLDAHGLRSAPHCYGNAYGIYASGHLSAAVRNFEFVEYDDITIEGMDVSGYRIENGEIHVPATPGFGIVFDDELVTYLINRSGWS-----   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeeeeeeeeeeeee.........eeeeeeeeeeeee..eeeeee....hhhhhhhhh..hhhhhh......hhhhhhhhhhhhhhhhhhhhh.hhhhhhh.........eeeeeeeeee........hhhhhhhhhhhhhhhhhhh....eeee.hhhhh..hhhhhhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhhh...eeee.......hhhhhhhh....ee.......hhhhhhhhhhhhhhh..ee......hhhhhhhhhhhhhhh.....eee..eee..ee....ee...eeee........eehhhhhhhhhhhh.eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ops C   4 NITGIQSDWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHmTPEWAEDVIGRRLLDLFDDRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALmQEEAmQGYAKGQRHFKIKVGRGGRHmPLWEGTKRDIAIVRGISEVAGPAGKImIDANNAYNLNLTKEVLAALSDVNLYWLEEAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIWPGFTHWmELGEKLDAHGLRSAPHCYGNAYGIYASGHLSAAVRNFEFVEYDDITIEGmDVSGYRIENGEIHVPATPGFGIVFDDELVTYLINRSGWSEGHHH 389
                                    13        23        33        43        53        63|       73        83        93       103       113       123       133       143       153   |   163       173    |  183       193       203 |     213       223       233       243       253       263       273       283       293 |     303       313       323       333       343 |     353       363       373       383      
                                                                                       64-MSE                                                                                 152-MSE|                  178-MSE                    205-MSE                                                                                   295-MSE                                           345-MSE                                        
                                                                                                                                                                                   157-MSE

Chain D from PDB  Type:PROTEIN  Length:376
 aligned with D3EID5_GEOS4 | D3EID5 from UniProtKB/TrEMBL  Length:382

    Alignment length:376
                                                                                                                                                                                                                                                                                                                                                                                                               382  
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378   |  
         D3EID5_GEOS4     9 DWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHMTPEWAEDVIGRRLLDLFDDRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLEEAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEKLDAHGLRSAPHCYGNAYGIYASGHLSAAVRNFEFVEYDDITIEGMDVSGYRIENGEIHVPATPGFGIVFDDELVTYLINRSGWS--   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE-3opsD01 D:190-256                                           -----MR_MLE_C-3opsD05 D:262-368                                                                                 ------------------ Pfam domains (1)
           Pfam domains (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE-3opsD02 D:190-256                                           -----MR_MLE_C-3opsD06 D:262-368                                                                                 ------------------ Pfam domains (2)
           Pfam domains (3) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE-3opsD03 D:190-256                                           -----MR_MLE_C-3opsD07 D:262-368                                                                                 ------------------ Pfam domains (3)
           Pfam domains (4) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE-3opsD04 D:190-256                                           -----MR_MLE_C-3opsD08 D:262-368                                                                                 ------------------ Pfam domains (4)
         Sec.struct. author ...eeeeeeeeeeeeeeeee.........eeeeeeeeeeeee...eeeee....hhhhhhhhh..............hhhhhhhhhhhhhhhhhhhh..hhhhhh..........eeeeeeeeee........hhhhhhhhhhhhhhhhhhh...eeeee........hhhhhhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhhh...eeee.......hhhhhhh.....ee.......hhhhhhhhhhhhhhh..ee........hhhhhhhhhhhhh.....eee..eee..ee....ee...eeee........eehhhhhhhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ops D  11 DWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHmTPEWAEDVIGRRLLDLFDDRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALmQEEAmQGYAKGQRHFKIKVGRGGRHmPLWEGTKRDIAIVRGISEVAGPAGKImIDANNAYNLNLTKEVLAALSDVNLYWLEEAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIWPGFTHWmELGEKLDAHGLRSAPHCYGNAYGIYASGHLSAAVRNFEFVEYDDITIEGmDVSGYRIENGEIHVPATPGFGIVFDDELVTYLINRSGWSEG 386
                                    20        30        40        50        60   |    70        80        90       100       110       120       130       140       150 |    |160       170       180       190       200    |  210       220       230       240       250       260       270       280       290    |  300       310       320       330       340    |  350       360       370       380      
                                                                                64-MSE                                                                                 152-MSE|                  178-MSE                    205-MSE                                                                                   295-MSE                                           345-MSE                                     
                                                                                                                                                                            157-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3OPS)

(no "CATH Domain" information available for 3OPS)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Enolase_TIM (82)

Family: MR_MLE (48)

Geobacillus sp. (strain Y412MC10) (2)

1a	MR_MLE-3opsD01	D:190-256
1b	MR_MLE-3opsD02	D:190-256
1c	MR_MLE-3opsD03	D:190-256
1d	MR_MLE-3opsD04	D:190-256

Family: MR_MLE_C (29)

Geobacillus sp. (strain Y412MC10) (2)

2a	MR_MLE_C-3opsD05	D:262-368
2b	MR_MLE_C-3opsD06	D:262-368
2c	MR_MLE_C-3opsD07	D:262-368
2d	MR_MLE_C-3opsD08	D:262-368

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (D3EID5_GEOS4 | D3EID5)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
		MG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MSE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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	Sites
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	Cis Peptide Bonds
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		Trp D:288 - Pro D:289	[ RasMol ]

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		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]
		Biological Unit 5	[ Jena3D ]
		Biological Unit 6	[ Jena3D ]

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	D3EID5_GEOS4 \| D3EID5	:	3n4f 3p3b 3qpe 3v5c 3v5f 3vcc

3n4f	RELATED ID: NYSGXRC-9825A RELATED DB: TARGETDB

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 41)

Sites (13, 13)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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Related Entries Specified in the PDB File