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(-) Description

Title :  THE STRUCTURE OF A PROLINE DIPEPTIDASE FROM STREPTOCOCCUS AGALACTIAE 2603V
 
Authors :  Y. Fan, R. Wu, J. Morales, S. Clancy, A. Joachimiak, Midwest Center Fo Structural Genomics (Mcsg)
Date :  31 Aug 10  (Deposition) - 22 Sep 10  (Release) - 22 Sep 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.57
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A (1x),B (1x)
Keywords :  Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Fan, R. Wu, J. Morales, S. Clancy, A. Joachimiak
The Structure Of A Proline Dipeptidase From Streptococcus Agalactiae 2603V
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROLINE DIPEPTIDASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PEPQ, SAG0706
    Organism Scientific: STREPTOCOCCUS AGALACTIAE
    Organism Taxid: 208435
    Strain: 2603V/R

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3OOO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OOO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3OOO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OOO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OOO)

(-) Exons   (0, 0)

(no "Exon" information available for 3OOO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:132
 aligned with Q8E0M4_STRA5 | Q8E0M4 from UniProtKB/TrEMBL  Length:361

    Alignment length:132
                             1                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129  
         Q8E0M4_STRA5     - -MSKLNRIRHHLHSVQAELAVFSDPVTVNYLTGFFCDPHERQMFLFVYEDRDPILFVPALEVSRAKQSVPFPVFGYIDSENPWQKIASNLPSFSVSKVLAEFDNLNVTKFQGLQTVFDGHFENLTPYIQNMR 131
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...eeee.hhhhhhhhhh..........eeeee.....eeeee..hhhhhhhhh...eeee....hhhhhhhhhh......eeee.....hhhhhhhhhhhh..eeee.hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ooo A   0 AmSKLNRIRHHLHSVQAELAVFSDPVTVNYLTGFFCDPHERQmFLFVYEDRDPILFVPALEVSRAKQSVPFPVFGYIDSENPWQKIASNLPSFSVSKVLAEFDNLNVTKFQGLQTVFDGHFENLTPYIQNmR 131
                             |       9        19        29        39  |     49        59        69        79        89        99       109       119       129| 
                             |                                       42-MSE                                                                                 130-MSE
                             1-MSE                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:132
 aligned with Q8E0M4_STRA5 | Q8E0M4 from UniProtKB/TrEMBL  Length:361

    Alignment length:132
                             1                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129  
         Q8E0M4_STRA5     - -MSKLNRIRHHLHSVQAELAVFSDPVTVNYLTGFFCDPHERQMFLFVYEDRDPILFVPALEVSRAKQSVPFPVFGYIDSENPWQKIASNLPSFSVSKVLAEFDNLNVTKFQGLQTVFDGHFENLTPYIQNMR 131
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ---Creatinase_N-3oooB01 B:3-131                                                                                                      Pfam domains (1)
           Pfam domains (2) ---Creatinase_N-3oooB02 B:3-131                                                                                                      Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhh...eeee.hhhhhhhhhh..........eeeee.....eeeee..hhhhhhhhh...eeee....hhhhhhhhhh......eeee.....hhhhhhhhhhhh..eeee.hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ooo B   0 AmSKLNRIRHHLHSVQAELAVFSDPVTVNYLTGFFCDPHERQmFLFVYEDRDPILFVPALEVSRAKQSVPFPVFGYIDSENPWQKIASNLPSFSVSKVLAEFDNLNVTKFQGLQTVFDGHFENLTPYIQNmR 131
                             |       9        19        29        39  |     49        59        69        79        89        99       109       119       129| 
                             |                                       42-MSE                                                                                 130-MSE
                             1-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OOO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OOO)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: AMP_N-like (22)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q8E0M4_STRA5 | Q8E0M4)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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