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(-) Description

Title :  STRUCTURAL BASIS FOR CYCLIC PY-IM POLYAMIDE ALLOSTERIC INHIBITION OF NUCLEAR RECEPTOR BINDING
 
Authors :  D. M. Chenoweth
Date :  27 Aug 10  (Deposition) - 08 Sep 10  (Release) - 27 Oct 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.95
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cyclic Py-Im Polyamide, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. M. Chenoweth, P. B. Dervan
Structural Basis For Cyclic Py-Im Polyamide Allosteric Inhibition Of Nuclear Receptor Binding.
J. Am. Chem. Soc. V. 132 14521 2010
PubMed-ID: 20812704  |  Reference-DOI: 10.1021/JA105068B

(-) Compounds

Molecule 1 - 5'-D(*CP*(C38)P*AP*GP*TP*AP*CP*TP*GP*G)-3'
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric/Biological Unit (3, 7)
No.NameCountTypeFull Name
11P21Ligand/Ion(23R,52R)-23,52-DIAMINO-5,11,17,28,34,40,46,57-OCTAMETHYL-2,5,8,11,14,17,20,25,28,31,34,37,40,43,46,49,54,57,60,64-ICOSAAZANONACYCLO[54.2.1.1~4,7~.1~10,13~.1~16,19~.1~27,30~.1~33,36~.1~39,42~.1~45,48~]HEXAHEXACONTA-1(58),4(66),6,10(65),12,16(64),18,27(63),29,33(62),35,39(61),41,45(60),47,56(59)-HEXADECAENE-3,9,15,21,26,32,38,44,50,55-DECONE
2C382Mod. Nucleotide5-IODO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
3CA4Ligand/IonCALCIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:124 , HOH A:246 , HOH A:247 , HOH A:252 , HOH A:253 , HOH B:125 , HOH B:245BINDING SITE FOR RESIDUE CA A 302
2AC2SOFTWAREHOH A:32 , HOH A:34 , HOH A:73 , HOH A:74 , HOH A:133 , HOH A:161BINDING SITE FOR RESIDUE CA A 300
3AC3SOFTWAREHOH A:32 , HOH A:34 , HOH A:41 , HOH A:73 , HOH A:74 , HOH A:133 , HOH A:161BINDING SITE FOR RESIDUE CA A 301
4AC4SOFTWAREDC A:1 , DG A:4 , DT A:5 , DA A:6 , DC A:7 , DT A:8 , DG A:9 , HOH A:160 , HOH A:242 , DC B:1 , DG B:4 , DT B:5 , DA B:6 , DC B:7 , DT B:8 , DG B:9 , DG B:10 , HOH B:31 , HOH B:39 , HOH B:40 , HOH B:47 , HOH B:53 , HOH B:56 , HOH B:86 , HOH B:87 , HOH B:102 , HOH B:129 , HOH B:137 , HOH B:138 , HOH B:146 , HOH B:159 , HOH B:169 , HOH B:170 , HOH B:176 , HOH B:182 , HOH B:198 , HOH B:200 , HOH B:203 , HOH B:204BINDING SITE FOR RESIDUE 1P2 B 500
5AC5SOFTWAREC38 B:2 , HOH B:45 , HOH B:85BINDING SITE FOR RESIDUE CA B 303

(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:DNA  Length:10
                                         
                  3omj A  1 CcAGTACTGG 10
                             |      10
                             |        
                             2-C38    


Chain B from PDB  Type:DNA  Length:10
                                         
                  3omj B  1 CcAGTACTGG 10
                             |      10
                             2-C38
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 Classification and Annotation

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