3OM7 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF B. MEGATERIUM LEVANSUCRASE MUTANT Y247W

Authors :   C. P. Strube, A. Homann, M. Gamer, D. Jahn, J. Seibel, D. W. Heinz

Date :   26 Aug 10 (Deposition) - 23 Mar 11 (Release) - 01 Jun 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.86

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: C  (1x)
Biol. Unit 2: A  (1x)
Biol. Unit 3: B  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Five Fold Beta-Propeller, Levansucrase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. P. Strube, A. Homann, M. Gamer, D. Jahn, J. Seibel, D. W. Heinz
Polysaccharide Synthesis Of The Levansucrase Sacb From Bacillus Megaterium Is Controlled By Distinct Surface Motifs.
J. Biol. Chem. V. 286 17593 2011
PubMed-ID: 21454585 | Reference-DOI: 10.1074/JBC.M110.203166

Molecule 1 - LEVANSUCRASE
	Chains	:	C, A, B, D
	EC Number	:	2.4.1.10
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	LEVANSUCRASE SACB, UNP RESIDUES 29-484
	Gene	:	SACB
	Mutation	:	YES
	Organism Common	:	BACILLUS FRUCTOSUS
	Organism Scientific	:	BACILLUS MEGATERIUM
	Organism Taxid	:	1404

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:			C
Biological Unit 2 (1x)	:	A
Biological Unit 3 (1x)	:		B
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 18)

No.	Name	Count	Type	Full Name
1	CA	4	Ligand/Ion	CALCIUM ION
2	PEG	3	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	PGE	4	Ligand/Ion	TRIETHYLENE GLYCOL
4	SO4	7	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL
4	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 5)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL
4	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 3 (3, 3)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL
4	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 4 (3, 3)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL
4	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (17, 17)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HOH C:3 , ASP C:251 , GLN C:282 , LEU C:318 , ASN C:320 , ASP C:349	BINDING SITE FOR RESIDUE CA C 1
02	AC2	SOFTWARE	TRP C:94 , TRP C:172 , HOH C:676	BINDING SITE FOR RESIDUE PGE C 485
03	AC3	SOFTWARE	LYS A:194 , ASN C:126 , THR C:169 , GLN C:170 , TYR C:191 , GLY C:193	BINDING SITE FOR RESIDUE SO4 C 486
04	AC4	SOFTWARE	ASN C:59 , LYS C:64 , ASP C:411 , HOH C:552	BINDING SITE FOR RESIDUE SO4 C 4
05	AC5	SOFTWARE	ASP A:251 , GLN A:282 , LEU A:318 , ASN A:320 , ASP A:349 , HOH A:488	BINDING SITE FOR RESIDUE CA A 1
06	AC6	SOFTWARE	HIS A:164 , LYS A:198 , ASP A:229 , HOH A:547 , HOH A:794	BINDING SITE FOR RESIDUE SO4 A 2
07	AC7	SOFTWARE	ASN A:59 , LYS A:64 , HIS A:409 , ASP A:411 , HOH A:1080	BINDING SITE FOR RESIDUE SO4 A 6
08	AC8	SOFTWARE	LYS A:140 , ARG A:472 , LEU A:474 , GLN A:478 , VAL A:481	BINDING SITE FOR RESIDUE SO4 A 8
09	AC9	SOFTWARE	TRP A:172 , ARG A:370	BINDING SITE FOR RESIDUE PGE A 485
10	BC1	SOFTWARE	ASP B:251 , GLN B:282 , LEU B:318 , ASN B:320 , ASP B:349 , HOH B:532	BINDING SITE FOR RESIDUE CA B 1
11	BC2	SOFTWARE	HIS B:266 , ASP B:330 , HOH B:554 , HIS D:266	BINDING SITE FOR RESIDUE SO4 B 5
12	BC3	SOFTWARE	PHE D:445	BINDING SITE FOR RESIDUE PEG B 485
13	BC4	SOFTWARE	TRP B:94 , ASP B:95	BINDING SITE FOR RESIDUE PGE B 486
14	BC5	SOFTWARE	ASP D:251 , GLN D:282 , LEU D:318 , ASN D:320 , ASP D:349 , HOH D:494	BINDING SITE FOR RESIDUE CA D 1
15	BC6	SOFTWARE	ASN D:297	BINDING SITE FOR RESIDUE SO4 D 7
16	BC7	SOFTWARE	TRP D:94 , PEG D:486	BINDING SITE FOR RESIDUE PGE D 485
17	BC8	SOFTWARE	TYR D:439 , PGE D:485 , HOH D:1081	BINDING SITE FOR RESIDUE PEG D 486

(no "SS Bond" information available for 3OM7)

Asymmetric Unit

No.	Residues
1	Glu C:447	-	Asp C:448
2	Glu A:447	-	Asp A:448
3	Glu B:447	-	Asp B:448
4	Glu D:447	-	Asp D:448

(no "SAP(SNP)/Variant" information available for 3OM7)

(no "PROSITE Motif" information available for 3OM7)

(no "Exon" information available for 3OM7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:448
 aligned with D5DC07_BACMD | D5DC07 from UniProtKB/TrEMBL  Length:484

    Alignment length:448
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473        
         D5DC07_BACMD    34 SKDFNNSYGISHITRDNMVKIPQQQNSDQFKVPAFDESTIKNIASAKGKNASGNTIDLDVWDSWPLQNADGTVATYHGYQIVFALAGDPKDSNDTSVYLFYKKAGDKSIDSWKNAGRVFKDSDKFVPNDPHLKNQTQEWSGSGTLTKDGKVRLFYTDYSGKQYGKQTLTTAQVNMSQPNDNTLKVDGVEDYKSIFDGDGKIYQTVQQFIDEGGYDTGDNHTLRDPHYIEDNGHKYLVFEANTGTEDGYQGEDSLYNRAYYGGNNPFFQSEKKKLLEGSNKEKASLANGALGIIELNDDYTLKKVMKPLITSNTVTDEIERANIFKKDGKWYLFTDSRGSKMTIDGIGQDDVYMLGYVSNTLTGKYKPLNDTGLVLHMDLDPNDKTFTYSHFAVPQTKGDNVVITSYMTNRGFYEDNHSTFAPSFLVNIDGSKTSVVKDRVLEQGQLTV 481
               SCOP domains d3om7a_ A: Levansucrase                                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........ee.hhhhhhhhhhhh..........hhhhh......eee.....eee.eeeeeeeee...........eeeeeeeee........eeeeeeee....hhhhheeeee....hhhhh....hhhhh.eeeeeeeee.....eeeeeeeee.....eeeeeeeeeeee.......eeeeeeeeeeee........hhhhhhhhhhhhhh.....eeeeeeee..eeeeeeeee........hhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhh.eeeeeeee.....eeeeeeeeee........eeeeeeee..eeeeeeeee.hhh.........eeeeeeee.......ee.hhh.eeeee.........eeeeeee......eeeeeeee...........ee.eeeeeeee..eeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3om7 A  34 SKDFNNSYGISHITRDNMVKIPQQQNSDQFKVPAFDESTIKNIASAKGKNASGNTIDLDVWDSWPLQNADGTVATYHGYQIVFALAGDPKDSNDTSVYLFYKKAGDKSIDSWKNAGRVFKDSDKFVPNDPHLKNQTQEWSGSGTLTKDGKVRLFYTDYSGKQYGKQTLTTAQVNMSQPNDNTLKVDGVEDYKSIFDGDGKIYQTVQQFIDEGGWDTGDNHTLRDPHYIEDNGHKYLVFEANTGTEDGYQGEDSLYNRAYYGGNNPFFQSEKKKLLEGSNKEKASLANGALGIIELNDDYTLKKVMKPLITSNTVTDEIERANIFKKDGKWYLFTDSRGSKMTIDGIGQDDVYMLGYVSNTLTGKYKPLNDTGLVLHMDLDPNDKTFTYSHFAVPQTKGDNVVITSYMTNRGFYEDNHSTFAPSFLVNIDGSKTSVVKDRVLEQGQLTV 481
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473

Chain B from PDB  Type:PROTEIN  Length:448
 aligned with D5DC07_BACMD | D5DC07 from UniProtKB/TrEMBL  Length:484

    Alignment length:448
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473        
         D5DC07_BACMD    34 SKDFNNSYGISHITRDNMVKIPQQQNSDQFKVPAFDESTIKNIASAKGKNASGNTIDLDVWDSWPLQNADGTVATYHGYQIVFALAGDPKDSNDTSVYLFYKKAGDKSIDSWKNAGRVFKDSDKFVPNDPHLKNQTQEWSGSGTLTKDGKVRLFYTDYSGKQYGKQTLTTAQVNMSQPNDNTLKVDGVEDYKSIFDGDGKIYQTVQQFIDEGGYDTGDNHTLRDPHYIEDNGHKYLVFEANTGTEDGYQGEDSLYNRAYYGGNNPFFQSEKKKLLEGSNKEKASLANGALGIIELNDDYTLKKVMKPLITSNTVTDEIERANIFKKDGKWYLFTDSRGSKMTIDGIGQDDVYMLGYVSNTLTGKYKPLNDTGLVLHMDLDPNDKTFTYSHFAVPQTKGDNVVITSYMTNRGFYEDNHSTFAPSFLVNIDGSKTSVVKDRVLEQGQLTV 481
               SCOP domains d3om7b_ B: Levansucrase                                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........ee.hhhhhhhhhhhh..........hhhhh......eeee...eeee.eeeeeeeee...........eeeeeeeeehhhhh...eeeeeeee....hhhhheeeee..hhhhhhh....hhhhh.eeeeeeeee.....eeeeeeeee.....eeeeeeeeeeee.......eeeeeeeeeeee........hhhhhhhhhhhhhh.....eeeeeeee..eeeeeeeee........hhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhh.eeeeeeee.....eeeeeeeeee........eeeeeeee..eeeeeeeee.hhh.........eeeeeeee.......ee.hhh.eeeee.........eeeeeee......eeeeeeee...........ee...eeeeee..eeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3om7 B  34 SKDFNNSYGISHITRDNMVKIPQQQNSDQFKVPAFDESTIKNIASAKGKNASGNTIDLDVWDSWPLQNADGTVATYHGYQIVFALAGDPKDSNDTSVYLFYKKAGDKSIDSWKNAGRVFKDSDKFVPNDPHLKNQTQEWSGSGTLTKDGKVRLFYTDYSGKQYGKQTLTTAQVNMSQPNDNTLKVDGVEDYKSIFDGDGKIYQTVQQFIDEGGWDTGDNHTLRDPHYIEDNGHKYLVFEANTGTEDGYQGEDSLYNRAYYGGNNPFFQSEKKKLLEGSNKEKASLANGALGIIELNDDYTLKKVMKPLITSNTVTDEIERANIFKKDGKWYLFTDSRGSKMTIDGIGQDDVYMLGYVSNTLTGKYKPLNDTGLVLHMDLDPNDKTFTYSHFAVPQTKGDNVVITSYMTNRGFYEDNHSTFAPSFLVNIDGSKTSVVKDRVLEQGQLTV 481
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473

Chain C from PDB  Type:PROTEIN  Length:448
 aligned with D5DC07_BACMD | D5DC07 from UniProtKB/TrEMBL  Length:484

    Alignment length:448
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473        
         D5DC07_BACMD    34 SKDFNNSYGISHITRDNMVKIPQQQNSDQFKVPAFDESTIKNIASAKGKNASGNTIDLDVWDSWPLQNADGTVATYHGYQIVFALAGDPKDSNDTSVYLFYKKAGDKSIDSWKNAGRVFKDSDKFVPNDPHLKNQTQEWSGSGTLTKDGKVRLFYTDYSGKQYGKQTLTTAQVNMSQPNDNTLKVDGVEDYKSIFDGDGKIYQTVQQFIDEGGYDTGDNHTLRDPHYIEDNGHKYLVFEANTGTEDGYQGEDSLYNRAYYGGNNPFFQSEKKKLLEGSNKEKASLANGALGIIELNDDYTLKKVMKPLITSNTVTDEIERANIFKKDGKWYLFTDSRGSKMTIDGIGQDDVYMLGYVSNTLTGKYKPLNDTGLVLHMDLDPNDKTFTYSHFAVPQTKGDNVVITSYMTNRGFYEDNHSTFAPSFLVNIDGSKTSVVKDRVLEQGQLTV 481
               SCOP domains d3om7c_ C: Levansucrase                                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........ee.hhhhhhhhhhhh..........hhhhh......eee.....eee.eeeeeeeee...........eeeeeeeee........eeeeeeee....hhhhheeeee..hhhhhhh....hhhhh.eeeeeeeee.....eeeeeeeee.....eeeeeeeeeeee.......eeeeeeeeeeee........hhhhhhhhhhhhhh.....eeeeeeee..eeeeeeeee........hhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhh.eeeeeeee.....eeeeeeeeee.......eeeeeeeee..eeeeeeeee.hhh.........eeeeeeee.......ee.hhh.eeeee.........eeeeeee......eeeeeeee...........ee.eeeeeeee..eeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3om7 C  34 SKDFNNSYGISHITRDNMVKIPQQQNSDQFKVPAFDESTIKNIASAKGKNASGNTIDLDVWDSWPLQNADGTVATYHGYQIVFALAGDPKDSNDTSVYLFYKKAGDKSIDSWKNAGRVFKDSDKFVPNDPHLKNQTQEWSGSGTLTKDGKVRLFYTDYSGKQYGKQTLTTAQVNMSQPNDNTLKVDGVEDYKSIFDGDGKIYQTVQQFIDEGGWDTGDNHTLRDPHYIEDNGHKYLVFEANTGTEDGYQGEDSLYNRAYYGGNNPFFQSEKKKLLEGSNKEKASLANGALGIIELNDDYTLKKVMKPLITSNTVTDEIERANIFKKDGKWYLFTDSRGSKMTIDGIGQDDVYMLGYVSNTLTGKYKPLNDTGLVLHMDLDPNDKTFTYSHFAVPQTKGDNVVITSYMTNRGFYEDNHSTFAPSFLVNIDGSKTSVVKDRVLEQGQLTV 481
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473

Chain D from PDB  Type:PROTEIN  Length:448
 aligned with D5DC07_BACMD | D5DC07 from UniProtKB/TrEMBL  Length:484

    Alignment length:448
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473        
         D5DC07_BACMD    34 SKDFNNSYGISHITRDNMVKIPQQQNSDQFKVPAFDESTIKNIASAKGKNASGNTIDLDVWDSWPLQNADGTVATYHGYQIVFALAGDPKDSNDTSVYLFYKKAGDKSIDSWKNAGRVFKDSDKFVPNDPHLKNQTQEWSGSGTLTKDGKVRLFYTDYSGKQYGKQTLTTAQVNMSQPNDNTLKVDGVEDYKSIFDGDGKIYQTVQQFIDEGGYDTGDNHTLRDPHYIEDNGHKYLVFEANTGTEDGYQGEDSLYNRAYYGGNNPFFQSEKKKLLEGSNKEKASLANGALGIIELNDDYTLKKVMKPLITSNTVTDEIERANIFKKDGKWYLFTDSRGSKMTIDGIGQDDVYMLGYVSNTLTGKYKPLNDTGLVLHMDLDPNDKTFTYSHFAVPQTKGDNVVITSYMTNRGFYEDNHSTFAPSFLVNIDGSKTSVVKDRVLEQGQLTV 481
               SCOP domains d3om7d_ D: Levansucrase                                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -Glyco_hydro_68-3om7D01 D:35-480                                                                                                                                                                                                                                                                                                                                                                                                                               - Pfam domains (1)
           Pfam domains (2) -Glyco_hydro_68-3om7D02 D:35-480                                                                                                                                                                                                                                                                                                                                                                                                                               - Pfam domains (2)
           Pfam domains (3) -Glyco_hydro_68-3om7D03 D:35-480                                                                                                                                                                                                                                                                                                                                                                                                                               - Pfam domains (3)
           Pfam domains (4) -Glyco_hydro_68-3om7D04 D:35-480                                                                                                                                                                                                                                                                                                                                                                                                                               - Pfam domains (4)
         Sec.struct. author ..........ee.hhhhhhhhhhhhh.........hhhhh......eee.....eee.eeeeeeeee...........eeeeeeeeehhhhh...eeeeeeee....hhhhheeeee....hhhhh....hhhhh.eeeeeeeee.....eeeeeeeee.....eeeeeeeeeeee.......eeeeeeeeeeee........hhhhhhhhhhhhhh.....eeeeeeee..eeeeeeeee........hhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhh.eeeeeeee.....eeeeeeeeee........eeeeeeee..eeeeeeeee.hhh.........eeeeeeee.......ee.hhh.eeeee.........eeeeeee......eeeeeeee...........ee...eeeeee..eeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3om7 D  34 SKDFNNSYGISHITRDNMVKIPQQQNSDQFKVPAFDESTIKNIASAKGKNASGNTIDLDVWDSWPLQNADGTVATYHGYQIVFALAGDPKDSNDTSVYLFYKKAGDKSIDSWKNAGRVFKDSDKFVPNDPHLKNQTQEWSGSGTLTKDGKVRLFYTDYSGKQYGKQTLTTAQVNMSQPNDNTLKVDGVEDYKSIFDGDGKIYQTVQQFIDEGGWDTGDNHTLRDPHYIEDNGHKYLVFEANTGTEDGYQGEDSLYNRAYYGGNNPFFQSEKKKLLEGSNKEKASLANGALGIIELNDDYTLKKVMKPLITSNTVTDEIERANIFKKDGKWYLFTDSRGSKMTIDGIGQDDVYMLGYVSNTLTGKYKPLNDTGLVLHMDLDPNDKTFTYSHFAVPQTKGDNVVITSYMTNRGFYEDNHSTFAPSFLVNIDGSKTSVVKDRVLEQGQLTV 481
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: 5-bladed beta-propeller (42)

Superfamily: Arabinanase/levansucrase/invertase (37)

Family: Levansucrase (11)

Protein domain: Levansucrase (11)

Bacillus megaterium [TaxId: 1404] (5)

1a	d3om7a_	A:
1b	d3om7b_	B:
1c	d3om7c_	C:
1d	d3om7d_	D:

(no "CATH Domain" information available for 3OM7)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: B_Fructosidase (34)

Family: Glyco_hydro_68 (8)

Bacillus megaterium (strain DSM 319) (5)

1a	Glyco_hydro_68-3om7D01	D:35-480
1b	Glyco_hydro_68-3om7D02	D:35-480
1c	Glyco_hydro_68-3om7D03	D:35-480
1d	Glyco_hydro_68-3om7D04	D:35-480

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (D5DC07_BACMD | D5DC07)

molecular function
	GO:0050053	levansucrase activity	Catalysis of the reaction: sucrose + 2,6-beta-D-fructosyl(n) = glucose + 2,6-beta-D-fructosyl(n+1).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016757	transferase activity, transferring glycosyl groups	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
	GO:0009758	carbohydrate utilization	A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary carbohydrate sources,usually glucose, and then activates genes to scavenge the last traces of the primary carbohydrate source and to transport and metabolize alternate carbohydrate sources. The utilization process begins when the cell or organism detects carbohydrate levels, includes the activation of genes whose products detect, transport or metabolize carbohydrates, and ends when the carbohydrate is incorporated into the cell or organism's metabolism.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		CA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PEG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PGE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]
		BC8	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Glu A:447 - Asp A:448	[ RasMol ]
		Glu B:447 - Asp B:448	[ RasMol ]
		Glu C:447 - Asp C:448	[ RasMol ]
		Glu D:447 - Asp D:448	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format \| Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	3om7
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	D5DC07_BACMD \| D5DC07
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	2.4.1.10
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	D5DC07_BACMD \| D5DC07
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/TrEMBL
	D5DC07_BACMD \| D5DC07	:	3om2 3om4 3om5 3om6

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 18)

Sites (17, 17)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (0, 0)

Pfam Domains (1, 4)

Gene Ontology (5, 5)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File