3OKS - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF 4-AMINOBUTYRATE TRANSAMINASE FROM MYCOBACTERIUM SMEGMATIS

Authors :   Seattle Structural Genomics Center For Infectious Disease (S

Date :   25 Aug 10 (Deposition) - 27 Oct 10 (Release) - 22 Apr 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Ssgcid, Transferase, Seattle Structural Genomics Center For Infectious Disease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
PubMed-ID: 25613812 | Reference-DOI: 10.1016/J.TUBE.2014.12.003

Molecule 1 - 4-AMINOBUTYRATE TRANSAMINASE
	Chains	:	A, B, C, D
	EC Number	:	2.6.1.19
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	AVA0421
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	GABT, MSMEG_2959
	Organism Scientific	:	MYCOBACTERIUM SMEGMATIS
	Organism Taxid	:	246196
	Strain	:	ATCC 700084/MC(2)155

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 26)

No.	Name	Count	Type	Full Name
1	EDO	9	Ligand/Ion	1,2-ETHANEDIOL
2	FMT	12	Ligand/Ion	FORMIC ACID
3	LLP	4	Mod. Amino Acid	2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
4	MG	1	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (3, 13)

No.	Name	Count	Type	Full Name
1	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
2	FMT	7	Ligand/Ion	FORMIC ACID
3	LLP	2	Mod. Amino Acid	2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
4	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (3, 12)

No.	Name	Count	Type	Full Name
1	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
2	FMT	5	Ligand/Ion	FORMIC ACID
3	LLP	2	Mod. Amino Acid	2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
4	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (22, 22)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ALA A:163 , LYS A:172 , ILE A:182 , ARG A:184 , HOH A:587 , HOH A:588 , TYR C:183 , HOH C:486	BINDING SITE FOR RESIDUE EDO A 455
02	AC2	SOFTWARE	ASP A:151 , HIS A:152 , FMT A:470 , HOH A:816 , GLN C:218	BINDING SITE FOR RESIDUE EDO A 480
03	AC3	SOFTWARE	TYR A:154 , ARG A:157 , HOH A:492 , HOH A:1264 , MET B:95 , GLY B:320	BINDING SITE FOR RESIDUE FMT A 460
04	AC4	SOFTWARE	ASP A:257 , ARG A:306 , ILE A:309 , HOH A:659 , HOH A:988	BINDING SITE FOR RESIDUE FMT A 465
05	AC5	SOFTWARE	ASP A:151 , HIS A:152 , TYR A:416 , EDO A:480 , HOH A:1503	BINDING SITE FOR RESIDUE FMT A 470
06	AC6	SOFTWARE	ALA B:163 , LYS B:172 , ILE B:182 , ARG B:184 , HOH B:494 , HOH B:496 , HOH B:505 , TYR D:183	BINDING SITE FOR RESIDUE EDO B 455
07	AC7	SOFTWARE	ASP B:151 , HIS B:152 , TYR B:416 , FMT B:470 , HOH B:1590 , GLN D:218	BINDING SITE FOR RESIDUE EDO B 480
08	AC8	SOFTWARE	MET A:95 , GLY A:320 , TYR B:154 , ARG B:157 , HOH B:530 , HOH B:1316	BINDING SITE FOR RESIDUE FMT B 460
09	AC9	SOFTWARE	HIS B:141 , ASP B:257 , HOH B:700	BINDING SITE FOR RESIDUE FMT B 465
10	BC1	SOFTWARE	HIS B:152 , TYR B:416 , EDO B:480 , HOH B:1335	BINDING SITE FOR RESIDUE FMT B 470
11	BC2	SOFTWARE	GLU A:100 , HOH A:478 , ARG B:19 , VAL B:54 , HOH B:554 , HOH B:1573 , HIS C:10	BINDING SITE FOR RESIDUE FMT B 475
12	BC3	SOFTWARE	HOH C:459 , HOH C:564 , HOH C:1319 , HOH C:1352 , HOH C:1364 , HOH C:1442	BINDING SITE FOR RESIDUE MG C 448
13	BC4	SOFTWARE	TYR A:183 , ALA C:163 , LYS C:172 , ILE C:182 , ARG C:184 , HOH C:487 , HOH C:638 , HOH C:1453	BINDING SITE FOR RESIDUE EDO C 455
14	BC5	SOFTWARE	GLN A:218 , ASP C:151 , HIS C:152 , HOH C:481	BINDING SITE FOR RESIDUE EDO C 480
15	BC6	SOFTWARE	TYR C:154 , ARG C:157 , HOH C:523 , HOH C:1275 , MET D:95 , GLY D:320	BINDING SITE FOR RESIDUE FMT C 460
16	BC7	SOFTWARE	HIS C:141 , ASP C:257 , ARG C:306 , HOH C:586 , HOH C:737	BINDING SITE FOR RESIDUE FMT C 465
17	BC8	SOFTWARE	TYR B:183 , ALA D:163 , LYS D:172 , ILE D:182 , ARG D:184 , HOH D:484 , HOH D:493 , HOH D:682	BINDING SITE FOR RESIDUE EDO D 455
18	BC9	SOFTWARE	GLN B:218 , ASP D:151 , HIS D:152 , TYR D:416 , FMT D:470	BINDING SITE FOR RESIDUE EDO D 480
19	CC1	SOFTWARE	THR D:38 , CYS D:400 , HIS D:404 , VAL D:410 , LEU D:411 , SER D:412 , HOH D:451	BINDING SITE FOR RESIDUE EDO D 485
20	CC2	SOFTWARE	MET C:95 , GLY C:320 , TYR D:154 , ARG D:157 , HOH D:944 , HOH D:1269	BINDING SITE FOR RESIDUE FMT D 460
21	CC3	SOFTWARE	HIS D:141 , ASP D:257 , ARG D:306 , HOH D:605	BINDING SITE FOR RESIDUE FMT D 465
22	CC4	SOFTWARE	ASP D:151 , HIS D:152 , TYR D:416 , EDO D:480	BINDING SITE FOR RESIDUE FMT D 470

(no "SS Bond" information available for 3OKS)

Asymmetric Unit

No.	Residues
1	Ile A:15	-	Pro A:16
2	Met A:169	-	Pro A:170
3	Gly A:176	-	Pro A:177
4	Ile B:15	-	Pro B:16
5	Met B:169	-	Pro B:170
6	Gly B:176	-	Pro B:177
7	Ile C:15	-	Pro C:16
8	Met C:169	-	Pro C:170
9	Gly C:176	-	Pro C:177
10	Ile D:15	-	Pro D:16
11	Met D:169	-	Pro D:170
12	Gly D:176	-	Pro D:177

(no "SAP(SNP)/Variant" information available for 3OKS)

(no "PROSITE Motif" information available for 3OKS)

(no "Exon" information available for 3OKS)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:444
 aligned with A0QWJ0_MYCS2 | A0QWJ0 from UniProtKB/TrEMBL  Length:446

    Alignment length:444
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441    
         A0QWJ0_MYCS2     2 SHPEQSRHLATAIPGPRSQALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 445
               SCOP domains d3oksa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhh...........eeeee..eeee....eeee.hhhhhh......hhhhhhhhhhhhh...........hhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhhhhhhhh..eeeee.......hhhhhhhh................eeee...hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.eeeeee..............hhhhhhhhhhhhh..eeeee............hhhhhhh....eeeehhhhhh....eeeeeehhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeee........hhhhhhhhhhhhhhh.ee.eee.....eeee......hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3oks A   3 SHPEQSRHLATAIPGPRSQALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAkGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 446
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442    
                                                                                                                                                                                                                                                                                                                           292-LLP

Chain B from PDB  Type:PROTEIN  Length:445
 aligned with A0QWJ0_MYCS2 | A0QWJ0 from UniProtKB/TrEMBL  Length:446

    Alignment length:445
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440     
         A0QWJ0_MYCS2     1 MSHPEQSRHLATAIPGPRSQALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 445
               SCOP domains d3oksb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhh...........eeeee..eeee....eeee.hhhhhh......hhhhhhhhhhhhh...........hhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhhhhhhhh..eeeee.......hhhhhhhh................eeee...hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee..............hhhhhhhhhhhhh..eeeee............hhhhh......eeeehhhhhh....eeeeeehhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeee........hhhhhhhhhhhhhhh.ee.eee.....eeee......hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oks B   2 VSHPEQSRHLATAIPGPRSQALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAkGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 446
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291|      301       311       321       331       341       351       361       371       381       391       401       411       421       431       441     
                                                                                                                                                                                                                                                                                                                            292-LLP

Chain C from PDB  Type:PROTEIN  Length:447
 aligned with A0QWJ0_MYCS2 | A0QWJ0 from UniProtKB/TrEMBL  Length:446

    Alignment length:447
                              1                                                                                                                                                                                                                                                                                                                                                                                                                                                            
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       
         A0QWJ0_MYCS2     - --MSHPEQSRHLATAIPGPRSQALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 445
               SCOP domains d3oksc_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhhhhhhhhh...........eeeee..eeee....eeee.hhhhhh......hhhhhhhhhhhhh...........hhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhhhhhhhh..eeeee.......hhhhhhhh................eeee...hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee..............hhhhhhhhhhhhh..eeeee............hhhhhhh....eeeehhhhhh....eeeeeehhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeee........hhhhhhhhhhhhhhh.ee.eee.....eeee......hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oks C   0 SMVSHPEQSRHLATAIPGPRSQALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAkGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 446
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289  |    299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       
                                                                                                                                                                                                                                                                                                                              292-LLP

Chain D from PDB  Type:PROTEIN  Length:447
 aligned with A0QWJ0_MYCS2 | A0QWJ0 from UniProtKB/TrEMBL  Length:446

    Alignment length:447
                              1                                                                                                                                                                                                                                                                                                                                                                                                                                                            
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       
         A0QWJ0_MYCS2     - --MSHPEQSRHLATAIPGPRSQALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 445
               SCOP domains d3oksd_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------------Aminotran_3-3oksD01 D:42-385                                                                                                                                                                                                                                                                                                                            ------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ------------------------------------------Aminotran_3-3oksD02 D:42-385                                                                                                                                                                                                                                                                                                                            ------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ------------------------------------------Aminotran_3-3oksD03 D:42-385                                                                                                                                                                                                                                                                                                                            ------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ------------------------------------------Aminotran_3-3oksD04 D:42-385                                                                                                                                                                                                                                                                                                                            ------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author .................hhhhhhhhhhhhhhh...........eeeee..eeee....eeee.hhhhhh......hhhhhhhhhhhhh...........hhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhhhhhhhh..eeeee.......hhhhhhhh................eeee...hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee..............hhhhhhhhhhhhhh.eeeee............hhhhhhh....eeeehhhhhh....eeeeeehhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee..eeeeee........hhhhhhhhhhhhhhh.ee.eee.....eeee......hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oks D   0 SMVSHPEQSRHLATAIPGPRSQALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAkGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 446
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289  |    299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       
                                                                                                                                                                                                                                                                                                                              292-LLP

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: PLP-dependent transferase-like (627)

Superfamily: PLP-dependent transferases (625)

Family: automated matches (163)

Protein domain: automated matches (163)

Mycobacterium smegmatis [TaxId: 246196] (2)

1a	d3oksa_	A:
1b	d3oksb_	B:
1c	d3oksc_	C:
1d	d3oksd_	D:

(no "CATH Domain" information available for 3OKS)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: PLP_aminotran (240)

Family: Aminotran_3 (44)

Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) (2)

1a	Aminotran_3-3oksD01	D:42-385
1b	Aminotran_3-3oksD02	D:42-385
1c	Aminotran_3-3oksD03	D:42-385
1d	Aminotran_3-3oksD04	D:42-385

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (A0QWJ0_MYCS2 | A0QWJ0)

molecular function
	GO:0003867	4-aminobutyrate transaminase activity	Catalysis of the reaction: 4-aminobutanoate + amino group acceptor = succinate semialdehyde + amino acid.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0030170	pyridoxal phosphate binding	Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
	GO:0008483	transaminase activity	Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0009448	gamma-aminobutyric acid metabolic process	The chemical reactions and pathways involving gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms.

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Description

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