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(-) Description

Title :  STRUCTURE OF CO-SUBSTITUTED HOMOPROTOCATECHUATE 2,3-DIOXYGENASE IN COMPLEX WITH 4-NITROCATECHOL AT 1.68 ANG RESOLUTION
 
Authors :  A. J. Fielding, E. G. Kovaleva, E. R. Farquhar, J. D. Lipscomb, L. Que Jr
Date :  23 Aug 10  (Deposition) - 29 Dec 10  (Release) - 16 Mar 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.68
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Oxidoreductase, Dioxygenase, Extradiol, Metal Substitution, 4- Nitrocatechol, 2-His-1-Carboxylate Facial Triad, Aromatic Ring Cleavage (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. J. Fielding, E. G. Kovaleva, E. R. Farquhar, J. D. Lipscomb, L. Que
A Hyperactive Cobalt-Substituted Extradiol-Cleaving Catecho Dioxygenase.
J. Biol. Inorg. Chem. V. 16 341 2011
PubMed-ID: 21153851  |  Reference-DOI: 10.1007/S00775-010-0732-0

(-) Compounds

Molecule 1 - HOMOPROTOCATECHUATE 2,3-DIOXYGENASE
    Chains: A, B, C, D
    EC Number: 1.13.11.15
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PYZW204
    Expression System Strain: JM109
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: HPCD
    Organism Scientific: BREVIBACTERIUM FUSCUM
    Organism Taxid: 47914
    Strain: ATCC 15993

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 20)

Asymmetric/Biological Unit (6, 20)
No.NameCountTypeFull Name
14NC3Ligand/Ion4-NITROCATECHOL
2CA1Ligand/IonCALCIUM ION
3CL4Ligand/IonCHLORIDE ION
4CO4Ligand/IonCOBALT (II) ION
5P6G5Ligand/IonHEXAETHYLENE GLYCOL
6PG43Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:155 , HIS A:214 , GLU A:267 , 4NC A:601 , HOH A:906BINDING SITE FOR RESIDUE CO A 500
02AC2SOFTWAREHIS A:155 , TRP A:192 , HIS A:200 , HIS A:214 , ARG A:243 , HIS A:248 , VAL A:250 , SER A:251 , TYR A:257 , GLU A:267 , TYR A:269 , ARG A:292 , ARG A:293 , CO A:500 , CL A:700 , HOH A:906BINDING SITE FOR RESIDUE 4NC A 601
03AC3SOFTWAREARG A:243 , HIS A:248 , TYR A:257 , ARG A:293 , 4NC A:601BINDING SITE FOR RESIDUE CL A 700
04AC4SOFTWAREGLU A:22 , LYS A:68 , LYS A:75 , ARG A:104 , PHE A:108 , ASP A:315 , GLY A:316BINDING SITE FOR RESIDUE P6G A 366
05AC5SOFTWAREHIS B:155 , HIS B:214 , GLU B:267 , HOH B:777 , HOH B:778 , HOH B:951BINDING SITE FOR RESIDUE CO B 500
06AC6SOFTWAREARG B:243 , HIS B:248 , ARG B:293BINDING SITE FOR RESIDUE CL B 700
07AC7SOFTWAREASP A:184 , GLU A:185 , HOH A:841 , ASP B:184 , GLU B:185 , HOH B:779BINDING SITE FOR RESIDUE CA B 366
08AC8SOFTWAREARG A:82 , GLY B:174 , ARG B:195 , HOH B:955 , HOH B:1008 , HOH B:1045BINDING SITE FOR RESIDUE PG4 B 367
09AC9SOFTWAREGLU B:22 , LYS B:75 , ARG B:104 , PHE B:108 , ASP B:315 , GLY B:316 , HOH B:935BINDING SITE FOR RESIDUE P6G B 368
10BC1SOFTWAREASP A:183 , THR A:284 , ALA A:344 , GLY A:345 , HOH A:884 , ASP B:183 , ALA B:344 , GLY B:345 , HOH B:854 , HOH B:953 , HOH B:989 , HOH B:990BINDING SITE FOR RESIDUE P6G B 369
11BC2SOFTWAREHIS C:155 , HIS C:214 , GLU C:267 , 4NC C:601 , HOH C:919BINDING SITE FOR RESIDUE CO C 500
12BC3SOFTWAREHIS C:155 , TRP C:192 , HIS C:200 , HIS C:214 , ARG C:243 , HIS C:248 , VAL C:250 , SER C:251 , TYR C:257 , GLU C:267 , TYR C:269 , ARG C:292 , ARG C:293 , CO C:500 , CL C:700 , HOH C:919BINDING SITE FOR RESIDUE 4NC C 601
13BC4SOFTWAREARG C:243 , HIS C:248 , ARG C:293 , 4NC C:601BINDING SITE FOR RESIDUE CL C 700
14BC5SOFTWAREALA C:12 , GLY C:174 , ARG C:176 , ARG C:195 , HOH C:884 , HOH C:944 , ARG D:82BINDING SITE FOR RESIDUE PG4 C 366
15BC6SOFTWAREGLU C:22 , THR C:67 , LYS C:68 , LYS C:75 , ARG C:104 , PHE C:108 , ASP C:315 , GLY C:316 , HOH C:899BINDING SITE FOR RESIDUE P6G C 367
16BC7SOFTWAREHIS D:155 , HIS D:214 , GLU D:267 , 4NC D:601 , HOH D:954BINDING SITE FOR RESIDUE CO D 500
17BC8SOFTWAREHIS D:155 , TRP D:192 , HIS D:200 , HIS D:214 , ARG D:243 , HIS D:248 , VAL D:250 , SER D:251 , TYR D:257 , GLU D:267 , TYR D:269 , ARG D:292 , ARG D:293 , CO D:500 , CL D:700 , HOH D:954BINDING SITE FOR RESIDUE 4NC D 601
18BC9SOFTWAREARG D:243 , HIS D:248 , ARG D:293 , 4NC D:601BINDING SITE FOR RESIDUE CL D 700
19CC1SOFTWAREILE C:321 , GLU C:323 , TYR D:45 , ASP D:106 , LYS D:110 , HOH D:1048BINDING SITE FOR RESIDUE PG4 D 366
20CC2SOFTWAREGLU D:22 , THR D:67 , LYS D:75 , PHE D:108 , ASP D:315 , GLY D:316 , HOH D:948BINDING SITE FOR RESIDUE P6G D 367

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OJK)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Gly A:209 -Pro A:210
2Gly A:244 -Pro A:245
3Gly B:209 -Pro B:210
4Gly B:244 -Pro B:245
5Gly C:209 -Pro C:210
6Gly C:244 -Pro C:245
7Gly D:209 -Pro D:210
8Gly D:244 -Pro D:245

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OJK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OJK)

(-) Exons   (0, 0)

(no "Exon" information available for 3OJK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:355
 aligned with Q45135_9MICO | Q45135 from UniProtKB/TrEMBL  Length:365

    Alignment length:355
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353     
         Q45135_9MICO     4 EIPKPVAPAPDILRCAYAELVVTDLAKSRNFYVDVLGLHVSYEDENQIYLRSFEEFIHHNLVLTKGPVAALKAMAFRVRTPEDVDKAEAYYQELGCRTERRKDGFVKGIGDALRVEDPLGFPYEFFFETTHVERLHMRYDLYSAGELVRLDHFNQVTPDVPRGRKYLEDLGFRVTEDIQDDEGTTYAAWMHRKGTVHDTALTGGNGPRLHHVAFSTHEKHNIIQICDKMGALRISDRIERGPGRHGVSNAFYLYILDPDNHRIEIYTQDYYTGDPDNPTITWNVHDNQRRDWWGNPVVPSWYTEASKVLDLDGNVQEIIERTDDSELEVTIGADGFSFTRAGDEDGSYHGQASKG 358
               SCOP domains d3ojka1 A:4-147 Homoprotocatechuate 2,3-dioxygenase                                                                                             d3ojka2 A:148-358 Homoprotocatechuate 2,3-dioxygenase                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeee.hhhhhhhhhh.....eeeee...eeeee.........eeeee....eeeeeeeee.hhhhhhhhhhhhhhh...eeee..........eeeee.....eeeee......................eeeeeeeee.hhhhhhhhhhhh..eeeeeee.....eeeeeee.......eeeee....eeeeeeee..hhhhhhhhhhhhhhh.hhh.eeeeeee......eeeeee.....eeeeee............eeee..............hhhhhhh....................hhhhhhhh...ee..........ee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ojk A   4 EIPKPVAPAPDILRCAYAELVVTDLAKSRNFYVDVLGLHVSYEDENQIYLRSFEEFIHHNLVLTKGPVAALKAMAFRVRTPEDVDKAEAYYQELGCRTERRKDGFVKGIGDALRVEDPLGFPYEFFFETTHVERLHMRYDLYSAGELVRLDHFNQVTPDVPRGRKYLEDLGFRVTEDIQDDEGTTYAAWMHRKGTVHDTALTGGNGPRLHHVAFSTHEKHNIIQICDKMGALRISDRIERGPGRHGVSNAFYLYILDPDNHRIEIYTQDYYTGDPDNPTITWNVHDNQRRDWWGNPVVPSWYTEASKVLDLDGNVQEIIERTDDSELEVTIGADGFSFTRAGDEDGSYHGQASKG 358
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353     


Chain B from PDB  Type:PROTEIN  Length:359
 aligned with Q45135_9MICO | Q45135 from UniProtKB/TrEMBL  Length:365

    Alignment length:359
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353         
         Q45135_9MICO     4 EIPKPVAPAPDILRCAYAELVVTDLAKSRNFYVDVLGLHVSYEDENQIYLRSFEEFIHHNLVLTKGPVAALKAMAFRVRTPEDVDKAEAYYQELGCRTERRKDGFVKGIGDALRVEDPLGFPYEFFFETTHVERLHMRYDLYSAGELVRLDHFNQVTPDVPRGRKYLEDLGFRVTEDIQDDEGTTYAAWMHRKGTVHDTALTGGNGPRLHHVAFSTHEKHNIIQICDKMGALRISDRIERGPGRHGVSNAFYLYILDPDNHRIEIYTQDYYTGDPDNPTITWNVHDNQRRDWWGNPVVPSWYTEASKVLDLDGNVQEIIERTDDSELEVTIGADGFSFTRAGDEDGSYHGQASKGFKLG 362
               SCOP domains d3ojkb1 B:4-147 Homoprotocatechuate 2,3-dioxygenase                                                                                             d3ojkb2 B:148-362 Homoprotocatechuate 2,3-dioxygenase                                                                                                                                                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeee.hhhhhhhhhh.....eeeee...eeeee.........eeeee....eeeeeeeee.hhhhhhhhhhhhhhh...eeee..........eeeee.....eeeee......................eeeeeeeee.hhhhhhhhhhhh..eeeeeee.....eeeeeee.......eeeee....eeeeeeee..hhhhhhhhhhhhhhh.hhh.eeeeeee......eeeeee.....eeeeee............eeee..............hhhhhhh.ee.................hhhhhhh....ee..........ee..hhh.eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ojk B   4 EIPKPVAPAPDILRCAYAELVVTDLAKSRNFYVDVLGLHVSYEDENQIYLRSFEEFIHHNLVLTKGPVAALKAMAFRVRTPEDVDKAEAYYQELGCRTERRKDGFVKGIGDALRVEDPLGFPYEFFFETTHVERLHMRYDLYSAGELVRLDHFNQVTPDVPRGRKYLEDLGFRVTEDIQDDEGTTYAAWMHRKGTVHDTALTGGNGPRLHHVAFSTHEKHNIIQICDKMGALRISDRIERGPGRHGVSNAFYLYILDPDNHRIEIYTQDYYTGDPDNPTITWNVHDNQRRDWWGNPVVPSWYTEASKVLDLDGNVQEIIERTDDSELEVTIGADGFSFTRAGDEDGSYHGQASKGFKLG 362
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353         


Chain C from PDB  Type:PROTEIN  Length:351
 aligned with Q45135_9MICO | Q45135 from UniProtKB/TrEMBL  Length:365

    Alignment length:351
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353 
         Q45135_9MICO     4 EIPKPVAPAPDILRCAYAELVVTDLAKSRNFYVDVLGLHVSYEDENQIYLRSFEEFIHHNLVLTKGPVAALKAMAFRVRTPEDVDKAEAYYQELGCRTERRKDGFVKGIGDALRVEDPLGFPYEFFFETTHVERLHMRYDLYSAGELVRLDHFNQVTPDVPRGRKYLEDLGFRVTEDIQDDEGTTYAAWMHRKGTVHDTALTGGNGPRLHHVAFSTHEKHNIIQICDKMGALRISDRIERGPGRHGVSNAFYLYILDPDNHRIEIYTQDYYTGDPDNPTITWNVHDNQRRDWWGNPVVPSWYTEASKVLDLDGNVQEIIERTDDSELEVTIGADGFSFTRAGDEDGSYHGQ 354
               SCOP domains d3ojkc1 C:4-147 Homoprotocatechuate 2,3-dioxygenase                                                                                             d3ojkc2 C:148-354 Homoprotocatechuate 2,3-dioxygenase                                                                                                                                                           SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeee.hhhhhhhhhh.....eeeee...eeeee.........eeeee....eeeeeeeee..hhhhhhhhhhhhhh...eeee..........eeeee.....eeeee......................eeeeeeeee.hhhhhhhhhhhh..eeeeeee.....eeeeeee.......eeeee....eeeeeeee..hhhhhhhhhhhhhhh.hhh.eeeeeee......eeeeee.....eeeeee............eeee..............hhhhhhh.ee.................hhhhhhhh...ee..........ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ojk C   4 EIPKPVAPAPDILRCAYAELVVTDLAKSRNFYVDVLGLHVSYEDENQIYLRSFEEFIHHNLVLTKGPVAALKAMAFRVRTPEDVDKAEAYYQELGCRTERRKDGFVKGIGDALRVEDPLGFPYEFFFETTHVERLHMRYDLYSAGELVRLDHFNQVTPDVPRGRKYLEDLGFRVTEDIQDDEGTTYAAWMHRKGTVHDTALTGGNGPRLHHVAFSTHEKHNIIQICDKMGALRISDRIERGPGRHGVSNAFYLYILDPDNHRIEIYTQDYYTGDPDNPTITWNVHDNQRRDWWGNPVVPSWYTEASKVLDLDGNVQEIIERTDDSELEVTIGADGFSFTRAGDEDGSYHGQ 354
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353 


Chain D from PDB  Type:PROTEIN  Length:359
 aligned with Q45135_9MICO | Q45135 from UniProtKB/TrEMBL  Length:365

    Alignment length:359
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353         
         Q45135_9MICO     4 EIPKPVAPAPDILRCAYAELVVTDLAKSRNFYVDVLGLHVSYEDENQIYLRSFEEFIHHNLVLTKGPVAALKAMAFRVRTPEDVDKAEAYYQELGCRTERRKDGFVKGIGDALRVEDPLGFPYEFFFETTHVERLHMRYDLYSAGELVRLDHFNQVTPDVPRGRKYLEDLGFRVTEDIQDDEGTTYAAWMHRKGTVHDTALTGGNGPRLHHVAFSTHEKHNIIQICDKMGALRISDRIERGPGRHGVSNAFYLYILDPDNHRIEIYTQDYYTGDPDNPTITWNVHDNQRRDWWGNPVVPSWYTEASKVLDLDGNVQEIIERTDDSELEVTIGADGFSFTRAGDEDGSYHGQASKGFKLG 362
               SCOP domains d3ojkd1 D:4-147 Homoprotocatechuate 2,3-dioxygenase                                                                                             d3ojkd2 D:148-362 Homoprotocatechuate 2,3-dioxygenase                                                                                                                                                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------------------------------Glyoxalase-3ojkD01 D:152-268                                                                                         ---------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------Glyoxalase-3ojkD02 D:152-268                                                                                         ---------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------------------------------------------Glyoxalase-3ojkD03 D:152-268                                                                                         ---------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------------------------------------------Glyoxalase-3ojkD04 D:152-268                                                                                         ---------------------------------------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) ----------------------------------------------------------------------------------------------------------------------------------------------------Glyoxalase-3ojkD05 D:152-268                                                                                         ---------------------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ----------------------------------------------------------------------------------------------------------------------------------------------------Glyoxalase-3ojkD06 D:152-268                                                                                         ---------------------------------------------------------------------------------------------- Pfam domains (6)
           Pfam domains (7) ----------------------------------------------------------------------------------------------------------------------------------------------------Glyoxalase-3ojkD07 D:152-268                                                                                         ---------------------------------------------------------------------------------------------- Pfam domains (7)
           Pfam domains (8) ----------------------------------------------------------------------------------------------------------------------------------------------------Glyoxalase-3ojkD08 D:152-268                                                                                         ---------------------------------------------------------------------------------------------- Pfam domains (8)
         Sec.struct. author ...........eeeeeeeeeee.hhhhhhhhhh.....eeeee...eeeee.........eeeee....eeeeeeeee.hhhhhhhhhhhhhhh...eeee..........eeeee.....eeeee......................eeeeeeeee.hhhhhhhhhhhh..eeeeeee.....eeeeeee.......eeeee....eeeeeeee..hhhhhhhhhhhhhhh.hhh.eeeeeee......eeeeee.....eeeeee............eeee..............hhhhhhh....................hhhhhhh....ee..........ee..hhh.eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ojk D   4 EIPKPVAPAPDILRCAYAELVVTDLAKSRNFYVDVLGLHVSYEDENQIYLRSFEEFIHHNLVLTKGPVAALKAMAFRVRTPEDVDKAEAYYQELGCRTERRKDGFVKGIGDALRVEDPLGFPYEFFFETTHVERLHMRYDLYSAGELVRLDHFNQVTPDVPRGRKYLEDLGFRVTEDIQDDEGTTYAAWMHRKGTVHDTALTGGNGPRLHHVAFSTHEKHNIIQICDKMGALRISDRIERGPGRHGVSNAFYLYILDPDNHRIEIYTQDYYTGDPDNPTITWNVHDNQRRDWWGNPVVPSWYTEASKVLDLDGNVQEIIERTDDSELEVTIGADGFSFTRAGDEDGSYHGQASKGFKLG 362
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OJK)

(-) Pfam Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Clan: Glyoxalase (58)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (Q45135_9MICO | Q45135)
molecular function
    GO:0051213    dioxygenase activity    Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  3ojk
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  Q45135_9MICO | Q45135
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  1.13.11.15
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  Q45135_9MICO | Q45135
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q45135_9MICO | Q45135: 1f1x 1q0c 1q0o 2ig9 2iga 3bza 3ecj 3eck 3ojj 3ojn 3ojt 4ghc 4ghd 4ghe 4ghf 4ghg 4ghh 4z6l 4z6m 4z6n 4z6o 4z6p 4z6q 4z6r 4z6s 4z6t 4z6u 4z6v 4z6w 4z6z 5bwg 5bwh 5trx

(-) Related Entries Specified in the PDB File

3ojj STRUCTURE OF CO-SUBSTITUTED HOMOPROTOCATECHUATE 2,3- DIOXYGENASE FROM B.FUSCUM AT 1.72 ANG RESOLUTION
3ojn STRUCTURE OF MN-SUBSTITUTED HOMOPROTOCATECHUATE 2,3- DIOXYGENASE AT 1.65 ANG RESOLUTION
3ojt STRUCTURE OF NATIVE FE-CONTAINING HOMOPROTOCATECHUATE 2,3- DIOXYGENASE AT 1.70 ANG RESOLUTION