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(-) Description

Title :  CRYSTAL STRUCTURE OF ENOYL-ACP REDUCTASES I (FABI) FROM B. SUBTILIS (COMPLEX WITH NAD AND TCL)
 
Authors :  K. -H. Kim, B. H. Ha, S. J. Kim, S. K. Hong, K. Y. Hwang, E. E. Kim
Date :  19 Aug 10  (Deposition) - 05 Jan 11  (Release) - 16 Feb 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Fatty Acid Synthesis, Rossmann-Like Fold, Enoyl-Acp Reductases, Nadh Binding, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. -H. Kim, B. H. Ha, S. J. Kim, S. K. Hong, K. Y. Hwang, E. E. Kim
Crystal Structures Of Enoyl-Acp Reductases I (Fabi) And Iii (Fabl) From B. Subtilis
J. Mol. Biol. V. 406 403 2011
PubMed-ID: 21185310  |  Reference-DOI: 10.1016/J.JMB.2010.12.003

(-) Compounds

Molecule 1 - ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]
    Chains: A, B, C, D
    EC Number: 1.3.1.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: FABI
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Strain: 168
    Synonym: ENOYL-ACP REDUCTASES I, FABI, NADH-DEPENDENT ENOYL-ACP REDUCTASE, COLD SHOCK-INDUCED PROTEIN 15, CSI15, VEGETATIVE PROTEIN 241, VEG241

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
2TCL2Ligand/IonTRICLOSAN

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:14 , VAL A:15 , ALA A:16 , SER A:20 , ILE A:21 , ALA A:41 , LEU A:45 , CYS A:66 , ASP A:67 , VAL A:68 , CYS A:94 , ILE A:95 , ALA A:96 , LEU A:146 , THR A:147 , TYR A:148 , LYS A:165 , ALA A:191 , PRO A:193 , ILE A:194 , THR A:196 , LEU A:197 , SER A:198 , HOH A:298 , TCL A:502BINDING SITE FOR RESIDUE NAD A 501
2AC2SOFTWAREALA A:96 , ALA A:98 , TYR A:148 , TYR A:158 , MET A:161 , SER A:198 , ILE A:202 , NAD A:501BINDING SITE FOR RESIDUE TCL A 502
3AC3SOFTWAREGLY D:14 , VAL D:15 , SER D:20 , ILE D:21 , ALA D:41 , LEU D:45 , CYS D:66 , ASP D:67 , VAL D:68 , THR D:69 , CYS D:94 , ILE D:95 , ALA D:96 , LEU D:146 , THR D:147 , TYR D:148 , LYS D:165 , ALA D:191 , GLY D:192 , PRO D:193 , ILE D:194 , THR D:196 , LEU D:197 , SER D:198 , HOH D:290 , HOH D:294 , TCL D:602BINDING SITE FOR RESIDUE NAD D 601
4AC4SOFTWAREALA D:96 , ALA D:98 , TYR D:148 , TYR D:158 , MET D:161 , SER D:198 , NAD D:601BINDING SITE FOR RESIDUE TCL D 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OIF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3OIF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OIF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OIF)

(-) Exons   (0, 0)

(no "Exon" information available for 3OIF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:258
 aligned with FABI_BACSU | P54616 from UniProtKB/Swiss-Prot  Length:258

    Alignment length:258
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250        
           FABI_BACSU     1 MNFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPLRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFHITAR 258
               SCOP domains d3oifa_ A: Enoyl-ACP reductase                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeeee......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhh......eeee....hhhhhhhhhhhhhhhhh...eeee............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhh...eeeeeeee............hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3oif A   1 MNFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPLRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFHITAR 258
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250        


Chain B from PDB  Type:PROTEIN  Length:228
 aligned with FABI_BACSU | P54616 from UniProtKB/Swiss-Prot  Length:258

    Alignment length:257
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       
           FABI_BACSU     1 MNFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPLRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFHITA 257
               SCOP domains d3oifb_ B: Enoyl-ACP reductase                                                                                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee......hhhhhhhhhhhhh..eeeeee...hhhhhhhhhhh.......eeee....hhhhhhhhhhhhhhhhh...eeee...--------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee.----------hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....-----------hhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oif B   1 MNFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIAHCIA--------GEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT----------YNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIR-----------SILKDIEERAPLRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFHITA 257
                                    10        20        30        40        50        60        70        80        90     |   -    |  110       120       130       140      |  -       160       170       180       190    |    -      |210       220       230       240       250       
                                                                                                                          96      105                                       147        158                                  195         207                                                  


Chain C from PDB  Type:PROTEIN  Length:241
 aligned with FABI_BACSU | P54616 from UniProtKB/Swiss-Prot  Length:258

    Alignment length:257
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       
           FABI_BACSU     1 MNFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPLRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFHITA 257
               SCOP domains d3oifc_ C: Enoyl-ACP reductase                                                                                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee......hhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhhhhhhh...eeee.....hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhh...--hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee...--------------hhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oif C   1 MNFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVM--YNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPI--------------LKDIEERAPLRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFHITA 257
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150    |  160       170       180       190   |     -       210       220       230       240       250       
                                                                                                                                                                                    155  |                                 194            209                                                
                                                                                                                                                                                       158                                                                                                   


Chain D from PDB  Type:PROTEIN  Length:257
 aligned with FABI_BACSU | P54616 from UniProtKB/Swiss-Prot  Length:258

    Alignment length:258
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250        
           FABI_BACSU     1 MNFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPLRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFHITAR 258
               SCOP domains d3oifd_ D: Enoyl-ACP reductase                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -------------adh_short_C2-3oifD01 D:14-254                                                                                                                                                                                                                    ---- Pfam domains (1)
           Pfam domains (2) -------------adh_short_C2-3oifD02 D:14-254                                                                                                                                                                                                                    ---- Pfam domains (2)
           Pfam domains (3) -------------adh_short_C2-3oifD03 D:14-254                                                                                                                                                                                                                    ---- Pfam domains (3)
           Pfam domains (4) -------------adh_short_C2-3oifD04 D:14-254                                                                                                                                                                                                                    ---- Pfam domains (4)
         Sec.struct. author ........eeeee......hhhhhhhhhhhhh..eeeeee....hhhhhhhhhh.......eeee.....hhhhhhhhhhhhhhh....eeee.....hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee..........-.hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3oif D   1 MNFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKG-SDFNSILKDIEERAPLRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFHITAR 258
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200| |    210       220       230       240       250        
                                                                                                                                                                                                                                  201 |                                                       
                                                                                                                                                                                                                                    203
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OIF)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (FABI_BACSU | P54616)
molecular function
    GO:0004318    enoyl-[acyl-carrier-protein] reductase (NADH) activity    Catalysis of the reaction: acyl-[acyl-carrier protein] + NAD+ = trans-2,3-dehydroacyl-[acyl-carrier protein] + NADH + H+.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0070417    cellular response to cold    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
    GO:0006633    fatty acid biosynthetic process    The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
    GO:0030497    fatty acid elongation    The elongation of a fatty acid chain by the sequential addition of two-carbon units.
    GO:0006631    fatty acid metabolic process    The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0051289    protein homotetramerization    The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FABI_BACSU | P54616: 3oig

(-) Related Entries Specified in the PDB File

3oic ENOYL-ACP REDUCTASES III, APO-FORM
3oid ENOYL-ACP REDUCTASES III IN COMPLEX WITH NAD AND TRICLOSAN
3oig ENOYL-ACP REDUCTASES I IN COMPLEX WITH NAD AND INHIBITOR