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Asym./Biol. Unit (Jmol Viewer)

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Title :   CRYSTAL STRUCTURE OF SALMO SALAR P38ALPHA

Authors :   U. Rothweiler, K. Johnson, R. A. Engh

Date :   18 Aug 10 (Deposition) - 29 Jun 11 (Release) - 27 Jun 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym./Biol. Unit : A,B

Keywords :   Kinase Serine/Threonine-Protein Kinase Transferase, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   U. Rothweiler, E. Aberg, K. A. Johnson, T. E. Hansen, J. B. Jorgensen, R. A. Engh
P38Alpha Map Kinase Dimers With Swapped Activation Segments And A Novel Catalytic Loop Conformation
J. Mol. Biol. V. 411 474 2011
PubMed-ID: 21699901 | Reference-DOI: 10.1016/J.JMB.2011.06.013

Molecule 1 - P38A
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	P38A
	Organism Common	:	ATLANTIC SALMON
	Organism Scientific	:	SALMO SALAR
	Organism Taxid	:	8030

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 6)

No.	Name	Count	Type	Full Name
1	1N1	4	Ligand/Ion	N-(2-CHLORO-6-METHYLPHENYL)-2-({6-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]-2-METHYLPYRIMIDIN-4-YL}AMINO)-1,3-THIAZOLE-5-CARBOXAMIDE
2	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:32 , VAL A:39 , ALA A:52 , LYS A:54 , GLU A:72 , LEU A:76 , LEU A:105 , THR A:107 , LEU A:109 , MET A:110 , GLY A:111 , ASN A:116 , ASP A:169 , PHE A:170	BINDING SITE FOR RESIDUE 1N1 A 1000
2	AC2	SOFTWARE	ASP A:146 , ILE A:147 , ILE A:148 , ARG A:150 , TRP A:198 , MET A:199 , ASN A:202 , VAL A:205 , ARG B:190 , ILE B:194 , ALA B:256	BINDING SITE FOR RESIDUE 1N1 A 2000
3	AC3	SOFTWARE	GLY B:32 , VAL B:39 , ALA B:52 , LYS B:54 , GLU B:72 , LEU B:76 , LEU B:105 , THR B:107 , HIS B:108 , LEU B:109 , MET B:110 , ASN B:116 , ASP B:169 , PHE B:170	BINDING SITE FOR RESIDUE 1N1 B 1000
4	AC4	SOFTWARE	ARG A:190 , ASP B:146 , ILE B:147 , ILE B:148 , ARG B:150 , TRP B:198 , MET B:199 , ASN B:202 , VAL B:205 , SO4 B:3001	BINDING SITE FOR RESIDUE 1N1 B 2000
5	AC5	SOFTWARE	ARG B:150 , LYS B:153 , 1N1 B:2000	BINDING SITE FOR RESIDUE SO4 B 3001
6	AC6	SOFTWARE	ARG B:74 , HIS B:78 , TYR B:324	BINDING SITE FOR RESIDUE SO4 B 3004

(no "SS Bond" information available for 3OHT)

(no "Cis Peptide Bond" information available for 3OHT)

(no "SAP(SNP)/Variant" information available for 3OHT)

(no "PROSITE Motif" information available for 3OHT)

(no "Exon" information available for 3OHT)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:331
 aligned with A9UJZ9_SALSA | A9UJZ9 from UniProtKB/TrEMBL  Length:361

    Alignment length:348
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344        
         A9UJZ9_SALSA     5 ERPTFYRQELNKTIWEVPERYQTLSPVGSGAYGSVCSSYDVKSGLKIAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPATSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNMTVDIWSVGCIMAELLTGRTLFPGTDHINQLQQIMRLTGTPPASVISRMPSHEARNYINSLPQMPKRNFADVFIGANPLAVDLLEKMLVLDTDKRITASEALAHPYFSQYHDPDDEPESEPYDQSFESRQLEIEEWKRLTYEEVCSFETP 352
               SCOP domains d3ohta_ A: automated matches                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee..eeeeee..eeeeeeeeee..eeeeeeee....eeeeeeee.....hhhhhhhhhhhhhhhhhh.........eee............eeeee....hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh......hhh.eee.....eee....-----------------..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhh...hhhhhhhhh........hhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhh...............hhhhhh..hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3oht A   5 ERPTFYRQELNKTIWEVPERYQTLSPVGSGAYGSVCSSYDVKSGLKIAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPATSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFG-----------------YRAPEIMLNWMHYNMTVDIWSVGCIMAELLTGRTLFPGTDHINQLQQIMRLTGTPPASVISRMPSHEARNYINSLPQMPKRNFADVFIGANPLAVDLLEKMLVLDTDKRITASEALAHPYFSQYHDPDDEPESEPYDQSFESRQLEIEEWKRLTYEEVCSFETP 352
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164      |  -         -    |  194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344        
                                                                                                                                                                                                171               189

Chain B from PDB  Type:PROTEIN  Length:331
 aligned with A9UJZ9_SALSA | A9UJZ9 from UniProtKB/TrEMBL  Length:361

    Alignment length:348
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344        
         A9UJZ9_SALSA     5 ERPTFYRQELNKTIWEVPERYQTLSPVGSGAYGSVCSSYDVKSGLKIAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPATSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNMTVDIWSVGCIMAELLTGRTLFPGTDHINQLQQIMRLTGTPPASVISRMPSHEARNYINSLPQMPKRNFADVFIGANPLAVDLLEKMLVLDTDKRITASEALAHPYFSQYHDPDDEPESEPYDQSFESRQLEIEEWKRLTYEEVCSFETP 352
               SCOP domains d3ohtb_ B: automated matches                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) --------------------Pkinase-3ohtB01 B:25-309                                                                                                                                                                                                                                                                     ------------------------------------------- Pfam domains (1)
           Pfam domains (2) --------------------Pkinase-3ohtB02 B:25-309                                                                                                                                                                                                                                                                     ------------------------------------------- Pfam domains (2)
         Sec.struct. author ....eeeeee..eeeeee..eeeeeeeeee..eeeeeeee....eeeeeeee.....hhhhhhhhhhhhhhhhhh.........eee............eeeee....hhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee....-----------------..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh..hhhhhh...hhhhhhhhh........hhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhh...............hhhhhh..hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3oht B   5 ERPTFYRQELNKTIWEVPERYQTLSPVGSGAYGSVCSSYDVKSGLKIAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPATSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFG-----------------YRAPEIMLNWMHYNMTVDIWSVGCIMAELLTGRTLFPGTDHINQLQQIMRLTGTPPASVISRMPSHEARNYINSLPQMPKRNFADVFIGANPLAVDLLEKMLVLDTDKRITASEALAHPYFSQYHDPDDEPESEPYDQSFESRQLEIEEWKRLTYEEVCSFETP 352
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164      |  -         -    |  194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344        
                                                                                                                                                                                                171               189

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Protein kinase-like (PK-like) (2589)

Superfamily: Protein kinase-like (PK-like) (2589)

Family: automated matches (529)

Protein domain: automated matches (529)

Atlantic salmon (Salmo salar) [TaxId: 8030] (1)

1a	d3ohta_	A:
1b	d3ohtb_	B:

(no "CATH Domain" information available for 3OHT)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: PKinase (934)

Family: Pkinase (680)

Salmo salar (Atlantic salmon) (1)

1a	Pkinase-3ohtB01	B:25-309
1b	Pkinase-3ohtB02	B:25-309

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (A9UJZ9_SALSA | A9UJZ9)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0004707	MAP kinase activity	Catalysis of the reaction: protein + ATP = protein phosphate + ADP. This reaction is the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0004672	protein kinase activity	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
	GO:0004674	protein serine/threonine kinase activity	Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0000165	MAPK cascade	An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0006468	protein phosphorylation	The process of introducing a phosphate group on to a protein.
cellular component
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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