3OGN - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF AN ODORANT-BINDING PROTEIN FROM THE SOUTHERN HOUSE MOSQUITO COMPLEXED WITH AN OVIPOSITION PHEROMONE

Authors :   Y. Mao, J. Clardy

Date :   17 Aug 10 (Deposition) - 03 Nov 10 (Release) - 15 Dec 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.30

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Helix Bundle, Odorant-Binding Protein, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Mao, X. Xu, W. Xu, Y. Ishida, W. S. Leal, J. B. Ames, J. Clardy
Crystal And Solution Structures Of An Odorant-Binding Protein From The Southern House Mosquito Complexed With An Oviposition Pheromone.
Proc. Natl. Acad. Sci. Usa V. 107 19102 2010
PubMed-ID: 20956299 | Reference-DOI: 10.1073/PNAS.1012274107

Molecule 1 - ODORANT-BINDING PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	CPIPJ_CPIJ007604
	Organism Common	:	SOUTHERN HOUSE MOSQUITO
	Organism Scientific	:	CULEX QUINQUEFASCIATUS
	Organism Taxid	:	7176
	Synonym	:	MOSQUITO ODORANT BINDING PROTEIN

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	3OG	2	Ligand/Ion	(1S)-1-[(2R)-6-OXOTETRAHYDRO-2H-PYRAN-2-YL]UNDECYLACETATE
2	MG	4	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	3OG	1	Ligand/Ion	(1S)-1-[(2R)-6-OXOTETRAHYDRO-2H-PYRAN-2-YL]UNDECYLACETATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	3OG	1	Ligand/Ion	(1S)-1-[(2R)-6-OXOTETRAHYDRO-2H-PYRAN-2-YL]UNDECYLACETATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:10 , LEU A:15 , LEU A:80 , MET A:84 , ALA A:88 , MET A:91 , HIS A:111 , TRP A:114 , HIS A:121 , PHE A:123 , 3OG B:1	BINDING SITE FOR RESIDUE 3OG A 1
2	AC2	SOFTWARE	HIS A:23 , HOH A:146 , HOH A:191 , HOH A:326 , HOH A:363 , HOH A:364	BINDING SITE FOR RESIDUE MG A 126
3	AC3	SOFTWARE	HOH A:219 , HOH A:334 , HOH A:355 , HOH A:378 , HOH A:379 , HOH A:397	BINDING SITE FOR RESIDUE MG A 127
4	AC4	SOFTWARE	HOH A:143 , HOH A:193 , HOH A:242 , HOH A:311 , HOH A:402	BINDING SITE FOR RESIDUE MG A 128
5	AC5	SOFTWARE	3OG A:1 , TYR B:10 , LEU B:15 , LEU B:80 , MET B:84 , ALA B:88 , MET B:91 , HIS B:111 , TRP B:114 , HIS B:121 , PHE B:123	BINDING SITE FOR RESIDUE 3OG B 1
6	AC6	SOFTWARE	HIS B:23 , HOH B:174 , HOH B:281 , HOH B:328 , HOH B:360 , HOH B:370	BINDING SITE FOR RESIDUE MG B 126

Asymmetric Unit

No.	Residues
1	A:26	-	A:57
2	A:53	-	A:104
3	A:95	-	A:113
4	B:26	-	B:57
5	B:53	-	B:104
6	B:95	-	B:113

Asymmetric Unit

No.	Residues
1	Tyr A:10	-	Pro A:11
2	Tyr B:10	-	Pro B:11

(no "SAP(SNP)/Variant" information available for 3OGN)

(no "PROSITE Motif" information available for 3OGN)

(no "Exon" information available for 3OGN)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:124
 aligned with Q8T6I2_CULQU | Q8T6I2 from UniProtKB/TrEMBL  Length:149

    Alignment length:124
                                    35        45        55        65        75        85        95       105       115       125       135       145    
         Q8T6I2_CULQU    26 VTPRRDAEYPPPELLEALKPLHDICAKKTGVTDEAIIEFSDGKIHEDEKLKCYMNCLFHEAKVVDDNGDVHLEKLHDSLPNSMHDIAMHMGKRCLYPEGENLCEKAFWLHKCWKQADPKHYFLV 149
               SCOP domains d3ogna_ A: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ogn A   2 VTPRRDAEYPPPELLEALKPLHDICAKKTGVTDEAIIEFSDGKIHEDEKLKCYMNCLFHEAKVVDDNGDVHLEKLHDSLPNSMHDIAMHMGKRCLYPEGENLCEKAFWLHKCWKQADPKHYFLV 125
                                    11        21        31        41        51        61        71        81        91       101       111       121

Chain B from PDB  Type:PROTEIN  Length:124
 aligned with Q8T6I2_CULQU | Q8T6I2 from UniProtKB/TrEMBL  Length:149

    Alignment length:124
                                    35        45        55        65        75        85        95       105       115       125       135       145    
         Q8T6I2_CULQU    26 VTPRRDAEYPPPELLEALKPLHDICAKKTGVTDEAIIEFSDGKIHEDEKLKCYMNCLFHEAKVVDDNGDVHLEKLHDSLPNSMHDIAMHMGKRCLYPEGENLCEKAFWLHKCWKQADPKHYFLV 149
               SCOP domains d3ognb_ B: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) PBP_GOBP-3ognB01 B:2-119                                                                                              ------ Pfam domains (1)
           Pfam domains (2) PBP_GOBP-3ognB02 B:2-119                                                                                              ------ Pfam domains (2)
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ogn B   2 VTPRRDAEYPPPELLEALKPLHDICAKKTGVTDEAIIEFSDGKIHEDEKLKCYMNCLFHEAKVVDDNGDVHLEKLHDSLPNSMHDIAMHMGKRCLYPEGENLCEKAFWLHKCWKQADPKHYFLV 125
                                    11        21        31        41        51        61        71        81        91       101       111       121

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: EF Hand-like (739)

Superfamily: Insect pheromone/odorant-binding proteins (68)

Family: automated matches (18)

Protein domain: automated matches (18)

Culex quinquefasciatus [TaxId: 7176] (2)

1a	d3ogna_	A:
1b	d3ognb_	B:

(no "CATH Domain" information available for 3OGN)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: PBP_GOBP] (36)

Family: PBP_GOBP (36)

Culex quinquefasciatus (Southern house mosquito) (Culex pungens) (1)

1a	PBP_GOBP-3ognB01	B:2-119
1b	PBP_GOBP-3ognB02	B:2-119

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q8T6I2_CULQU | Q8T6I2)

molecular function
	GO:0005549		odorant binding		Interacting selectively and non-covalently with an odorant, any substance capable of stimulating the sense of smell.

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	Cis Peptide Bonds
		Tyr A:10 - Pro A:11	[ RasMol ]
		Tyr B:10 - Pro B:11	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

SS Bonds (6, 6)

Cis Peptide Bonds (2, 2)

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SAPs(SNPs)/Variants (0, 0)

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