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(-) Description

Title :  STRUCTURED DOMAIN OF CAENORHABDITIS ELEGANS BMY-1
 
Authors :  M. N. Collins, W. A. Hendrickson
Date :  14 Aug 10  (Deposition) - 02 Mar 11  (Release) - 02 Mar 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.37
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Molecular Chaperone, Protein Folding, Ywtd Propeller, Ldlr, Lrp, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. N. Collins, W. A. Hendrickson
Structural Characterization Of The Boca/Mesd Maturation Factors For Ldl-Receptor-Type Beta-Propeller Domains
Structure 2011
PubMed: search

(-) Compounds

Molecule 1 - BOCA/MESD CHAPERONE FOR YWTD BETA-PROPELLER-EGF PROTEIN 1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: SEQUENCE DATABASE RESIDUES 84-174
    Gene: BMY-1, F09E5.17
    Organism Common: NEMATODE
    Organism Scientific: CAENORHABDITIS ELEGANS
    Organism Taxid: 6239

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
2MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:170 , PHE A:172 , ASP A:173 , GLY A:174 , GLN B:119 , VAL B:131BINDING SITE FOR RESIDUE CL A 1
2AC2SOFTWARELYS A:153 , THR A:166 , ILE A:167 , THR B:166 , ILE B:167BINDING SITE FOR RESIDUE CL A 2
3AC3SOFTWAREHOH A:18 , ASN A:124 , HOH A:209BINDING SITE FOR RESIDUE CL A 3
4AC4SOFTWAREGLN A:119 , GLN A:130 , VAL A:131BINDING SITE FOR RESIDUE CL A 4

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OFG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3OFG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OFG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OFG)

(-) Exons   (0, 0)

(no "Exon" information available for 3OFG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:91
 aligned with Q8IG33_CAEEL | Q8IG33 from UniProtKB/TrEMBL  Length:186

    Alignment length:91
                                    93       103       113       123       133       143       153       163       173 
         Q8IG33_CAEEL    84 SKKGQTLMLFVGVVDPSQPDRSDIRPFTEKWTQIWQSQLYNNHVDLQVFVIDDNRAIFMFKNGEQAFEAKKFLLKQEFVSEVTIEGQSFDG 174
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee..........hhhhhhhhhhhhhhhhhhh...eeeeeee..eeeeee.hhhhhhhhhhhhhh...eeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 3ofg A  84 SKKGQTLmLFVGVVDPSQPDRSDIRPFTEKWTQIWQSQLYNNHVDLQVFVIDDNRAIFmFKNGEQAFEAKKFLLKQEFVSEVTIEGQSFDG 174
                                   |93       103       113       123       133       143       153       163       173 
                                  91-MSE                                            142-MSE                            


Chain B from PDB  Type:PROTEIN  Length:87
 aligned with Q8IG33_CAEEL | Q8IG33 from UniProtKB/TrEMBL  Length:186

    Alignment length:87
                                    97       107       117       127       137       147       157       167       
         Q8IG33_CAEEL    88 QTLMLFVGVVDPSQPDRSDIRPFTEKWTQIWQSQLYNNHVDLQVFVIDDNRAIFMFKNGEQAFEAKKFLLKQEFVSEVTIEGQSFDG 174
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Mesd-3ofgB01 B:88-174                                                                   Pfam domains (1)
           Pfam domains (2) Mesd-3ofgB02 B:88-174                                                                   Pfam domains (2)
         Sec.struct. author ..eeeeeee..........hhhhhhhhhhhhhhhhhhh....eeeeee..eeeeee...hhhhhhhhhhhh...eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 3ofg B  88 QTLmLFVGVVDPSQPDRSDIRPFTEKWTQIWQSQLYNNHVDLQVFVIDDNRAIFmFKNGEQAFEAKKFLLKQEFVSEVTIEGQSFDG 174
                               |    97       107       117       127       137    |  147       157       167       
                              91-MSE                                            142-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OFG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OFG)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Mesd] (8)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

2i9s NMR SOLUTION STRUCTURE OF MESD STRUCTURE DOMAIN
2rqk NMR SOLUTION STRUCTURE OF MESD
2rqm NMR SOLUTION STRUCTURE OF MESD
3ofe ORTHOLOG
3off ORTHOLOG
3ofh ORTHOLOG