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(-) Description

Title :  CRYSTAL STRUCTURE OF ALDOLASE II SUPERFAMILY PROTEIN FROM PSEUDOMONAS SYRINGAE
 
Authors :  C. Chang, O. Kagan, A. Savchenko, A. Edwards, A. Joachimiak, Midwest C Structural Genomics (Mcsg)
Date :  10 Aug 10  (Deposition) - 25 Aug 10  (Release) - 25 Aug 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (4x)
Biol. Unit 2:  B  (4x)
Keywords :  Psi-2, Midwest Center For Structural Genomics, Protein Structure Initiative, Mcsg, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, O. Kagan, A. Savchenko, A. Edwards, A. Joachimiak
Crystal Structure Of Aldolase Ii Superfamily Protein From Pseudomonas Syringae
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CLASS II ALDOLASE/ADDUCIN DOMAIN PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)GOLD
    Expression System Taxid: 469008
    Expression System Vector: PET28A-LIC
    Gene: PSPPH_2884
    Organism Scientific: PSEUDOMONAS SYRINGAE PV. PHASEOLICOLA 1448A
    Organism Taxid: 264730
    Strain: 1448A / RACE 6

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (4x): A 
Biological Unit 2 (4x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2SO44Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR B:157 , ALA B:175 , ASP B:176BINDING SITE FOR RESIDUE SO4 B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OCR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3OCR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OCR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OCR)

(-) Exons   (0, 0)

(no "Exon" information available for 3OCR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:251
 aligned with Q48HR6_PSE14 | Q48HR6 from UniProtKB/TrEMBL  Length:271

    Alignment length:253
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268   
         Q48HR6_PSE14    19 GSVRDRVSPQEWEVRVKLAAAYRLAALKRWTDHIYTHFSARVPGPDEHFLINAFGLLFDEITASNLVKVDIDGTIVDDPTGLGINYAGYVIHSAIHAARHDLQAVLHTHTRDGIAVSAQKDGLLPISQHSIAFSGRVAYHGYEGIALDLSERERLVADLGDKSVMILRNHGLLTGGVSVEHAIQQLHALEYACNIQIAAQSAGNAELVFPPREVIAKVEEQAKAIKDGNGPGVARHWNALIRELERSGTDYRD 271
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeee......eeee.....hhhhhhhhhheeee....eee...........hhhhhhhhhhh....eeeee.hhhhhhhhh........hhhhhh....eeee.......hhhhhhhhhhhhh...eeee...eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.--..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ocr A  19 GSVRDRVSPQEWEVRVKLAAAYRLAALKRWTDHIYTHFSARVPGPDEHFLINAFGLLFDEITASNLVKVDIDGTIVDDPTGLGINYAGYVIHSAIHAARHDLQAVLHTHTRDGIAVSAQKDGLLPISQHSIAFSGRVAYHGYEGIALDLSERERLVADLGDKSVmILRNHGLLTGGVSVEHAIQQLHALEYACNIQIAAQSAGNAELVFPPREVIAKVEEQAKAI--GNGPGVARHWNALIRELERSGTDYRD 271
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178    |  188       198       208       218       228       238    |  248       258       268   
                                                                                                                                                                                              183-MSE                                                     243  |                         
                                                                                                                                                                                                                                                             246                         


Chain B from PDB  Type:PROTEIN  Length:248
 aligned with Q48HR6_PSE14 | Q48HR6 from UniProtKB/TrEMBL  Length:271

    Alignment length:253
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268   
         Q48HR6_PSE14    19 GSVRDRVSPQEWEVRVKLAAAYRLAALKRWTDHIYTHFSARVPGPDEHFLINAFGLLFDEITASNLVKVDIDGTIVDDPTGLGINYAGYVIHSAIHAARHDLQAVLHTHTRDGIAVSAQKDGLLPISQHSIAFSGRVAYHGYEGIALDLSERERLVADLGDKSVMILRNHGLLTGGVSVEHAIQQLHALEYACNIQIAAQSAGNAELVFPPREVIAKVEEQAKAIKDGNGPGVARHWNALIRELERSGTDYRD 271
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------Aldolase_II-3ocrB01 B:34-215                                                                                                                                                          -------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---------------Aldolase_II-3ocrB02 B:34-215                                                                                                                                                          -------------------------------------------------------- Pfam domains (2)
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeee......eeee.....hhhhh.....eeee....eee.......hhhhhhhhhhhhhhh....eeeee.hhhhhhhhh........hhhhhh....eeee.........hhhhhhhhhhh...eeee...eeeeee.hhhhhhhhhhhhhhhhhhhhhhh..hhhhh...hhhhhhhhh...-----..hhhhhhhhhhhhhhhh...hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ocr B  19 GSVRDRVSPQEWEVRVKLAAAYRLAALKRWTDHIYTHFSARVPGPDEHFLINAFGLLFDEITASNLVKVDIDGTIVDDPTGLGINYAGYVIHSAIHAARHDLQAVLHTHTRDGIAVSAQKDGLLPISQHSIAFSGRVAYHGYEGIALDLSERERLVADLGDKSVmILRNHGLLTGGVSVEHAIQQLHALEYACNIQIAAQSAGNAELVFPPREVIAKVEEQA-----GNGPGVARHWNALIRELERSGTDYRD 271
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178    |  188       198       208       218       228       238 |     248       258       268   
                                                                                                                                                                                              183-MSE                                                  240   246
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OCR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OCR)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: Aldolase_II] (19)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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