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(-) Description

Title :  STRUCTURE OF THE C-TERMINAL DOMAIN OF CNM67, A CORE COMPONENT OF THE SPINDLE POLE BODY OF SACCHAROMYCES CEREVISIAE
 
Authors :  V. A Klenchin, J. J Frye, I. Rayment
Date :  04 Aug 10  (Deposition) - 23 Mar 11  (Release) - 22 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Coiled Coils, Structural Protein, Spindle Pole Body (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  V. A. Klenchin, J. J. Frye, M. H. Jones, M. Winey, I. Rayment
Structure-Function Analysis Of The C-Terminal Domain Of Cnm67, A Core Component Of The Saccharomyces Cerevisiae Spindle Pole Body.
J. Biol. Chem. V. 286 18240 2011
PubMed-ID: 21454609  |  Reference-DOI: 10.1074/JBC.M111.227371

(-) Compounds

Molecule 1 - HEAD MORPHOGENESIS PROTEIN, CHAOTIC NUCLEAR MIGRATION PROTEIN 67 FUSION PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Gene7, CNM67, YNL225C, N1264
    Organism CommonVIRUS, YEAST
    Organism ScientificBACILLUS PHAGE PHI29, SACCHAROMYCES CEREVISIAE
    Organism Taxid10756, 4932
    SynonymLATE PROTEIN GP7-CNM67 FUSION PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3OA7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OA7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3OA7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OA7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OA7)

(-) Exons   (0, 0)

(no "Exon" information available for 3OA7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:193
 aligned with CNM67_YEAST | P53865 from UniProtKB/Swiss-Prot  Length:581

    Alignment length:385
                                   198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568     
          CNM67_YEAST   189 GRDNLRQEERANSLQKELEAATKSNDKTLDNKKKIEEQTVLIENLTKDLSLNKEMLEKANDTIQTKHTALLSLTDSLRKAELFEIPIGILFFDLYDSEENSSKLDHILQEKYPNIKGFLCASQQEELSRISQRFKNAKAEAEDLRNELENKKIEIQTMREKNNTLIGTNKTLSKQNKILCDKFDKLTIDEKEILKGCNEEIKIKLERLNERLGSWEKSKEKYETSLKDKEKMLADAEKKTNTLSKELDNLRSRFGNLEGNTSERITIKNILQSRPDISAEECNFLMVEQIDSANLTTLQNTVKEIVLAVGIPYPKLRRKIPLLAIKLKYENIMLSNFAQRLHRQVYSQEMNLKKFTDQAYYDFMSTRRMDSIDHHLERCLDHLYD 573
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -  -----------------                                                                        ------                                              ----      ----------------------                                                                ------------SID-3oa7A01 A:441-573                                                                                                                 Pfam domains
         Sec.struct. author .--..hhhhhhhhhhhhhh.------------------------------------------------------------------------..hhhh----------------------------------------------hhhh------hhhhhhhhhhhhhhhhhhhhhh----------------------------------------------------------------hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--..hhhhhhhhhhhhhhhhh......hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oa7 A   1 G--PLKPEEHEDILNKLLDP------------------------------------------------------------------------ELAQSE----------------------------------------------RTEA------LQQLRVNYGSFVSEYNDLTKSH----------------------------------------------------------------NTLSKELDNLRSRFGNLEGNTSERITIKNILQSRPDISAEECNFLmVEQIDSANLTTLQNTVKEIVLAVGIPYPKLRRKIPLLAIKLKYENImLSNFAQRLHRQVY--EmNLKKFTDQAYYDFmSTRRmDSIDHHLERCLDHLYD 573
                            |  |     8        18         -         -         -         -         -         -         -  |    | -         -         -         -         -    |  | -    |   34        44     |   -         -         -         -         -         -         -|      438       448       458       468     | 478       488       498       508       518  |    528     | 538       548   |   558       568     
                            |  2              18                                                                       19   24                                             25 28     29                   50                                                              429                                          474-MSE                                        521-MSE      534  ||           552-MSE|                
                            1                                                                                                                                                                                                                                                                                                                                                         537|                557-MSE            
                                                                                                                                                                                                                                                                                                                                                                                       538-MSE                               

Chain A from PDB  Type:PROTEIN  Length:193
 aligned with SCAF_BPPH2 | P13848 from UniProtKB/Swiss-Prot  Length:98

    Alignment length:193
                                                                                                                                                                                        73                                   
                                                                                    58                                                                                 59   64 65     72 |                       98          
                                    10        20        30        40        50       | -         -         -         -         -         -         -         -         -|    |  66     | |75        85        95  |      -   
           SCAF_BPPH2     1 MPLKPEEHEDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHEKLAAEKD----------------------------------------------------------------------------------DLIVSN--SKLFRQIG-LTDKQEEDHKKADISETITIEDLEAK----------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------SID-3oa7A01 A:441-573                                                                                                               Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh......hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oa7 A   1 GPLKPEEHEDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERITIKNILQSRPDISAEECNFLmVEQIDSANLTTLQNTVKEIVLAVGIPYPKLRRKIPLLAIKLKYENImLSNFAQRLHRQVYEmNLKKFTDQAYYDFmSTRRmDSIDHHLERCLDHLYD 573
                                    10        20        30        40        50|      438       448       458       468     | 478       488       498       508       518  |    528     ||540       550 |    |560       570   
                                                                            50|                                          474-MSE                                        521-MSE      534||           552-MSE|                
                                                                            429                                                                                                       537|                557-MSE            
                                                                                                                                                                                       538-MSE                               

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OA7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OA7)

(-) Pfam Domains  (1, 1)

Asymmetric Unit

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)
Chain A   (CNM67_YEAST | P53865)
molecular function
    GO:0005200    structural constituent of cytoskeleton    The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.
biological process
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0051321    meiotic cell cycle    Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell via two nuclear divisions.
    GO:0007020    microtubule nucleation    The process in which tubulin alpha-beta heterodimers begin aggregation to form an oligomeric tubulin structure (a microtubule seed). Microtubule nucleation is the initiating step in the formation of a microtubule in the absence of any existing microtubules ('de novo' microtubule formation).
    GO:0007052    mitotic spindle organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle during a mitotic cell cycle.
    GO:0030435    sporulation resulting in formation of a cellular spore    The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005824    outer plaque of spindle pole body    One of three laminate structures that form the spindle pole body; the outer plaque is in the cytoplasm.
    GO:0005816    spindle pole body    The microtubule organizing center in fungi; functionally homologous to the animal cell centrosome.

Chain A   (SCAF_BPPH2 | P13848)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
    GO:0019076    viral release from host cell    The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
cellular component
    GO:0046806    viral scaffold    A complex of proteins that form a scaffold around which the viral capsid is constructed.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SCAF_BPPH2 | P138481no4 1noh 3mtu 4iff 4xa1 4xa3 4xa6 5cj1

(-) Related Entries Specified in the PDB File

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