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(-) Description

Title :  CRYSTAL STRUCTURE OF GBS1074, AN ESAT-6 HOMOLOGUE FROM GROUP B STREPTOCOCCUS
 
Authors :  S. A. White, A. Shukla, M. Anthony
Date :  04 Aug 10  (Deposition) - 10 Nov 10  (Release) - 16 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Wxg100, 4-Helix Bundle, Putative Virulence Factor, Putative Secreted Protein, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Shukla, M. Pallen, M. Anthony, S. A. White
The Homodimeric Gbs1074 From Streptococcus Agalactiae
Acta Crystallogr. , Sect. F V. F66 1421 2010
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN GBS1074
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE-80
    Expression System Strain: XL1-BLUE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GBS1074
    Organism Scientific: STREPTOCOCCUS AGALACTIAE
    Organism Taxid: 211110
    Strain: NEM316

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3O9O)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:92
 aligned with Q8E5F8_STRA3 | Q8E5F8 from UniProtKB/TrEMBL  Length:96

    Alignment length:92
                                    13        23        33        43        53        63        73        83        93  
          Q8E5F8_STRA3    4 IKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIASQIS 95
               SCOP domains d3o9oa_ A: automated matches                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  3o9o A  4 IKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIASQIS 95
                                    13        23        33        43        53        63        73        83        93  


Chain B from PDB  Type:PROTEIN  Length:96
 aligned with Q8E5F8_STRA3 | Q8E5F8 from UniProtKB/TrEMBL  Length:96

    Alignment length:96
                             1                                                                                              
                             |       9        19        29        39        49        59        69        79        89      
          Q8E5F8_STRA3    - -MAQIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIASQIS 95
               SCOP domains d3o9ob_ B: automated matches                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ---WXG100-3o9oB01 B:3-88                                                                 ------- Pfam domains (1)
           Pfam domains (2) ---WXG100-3o9oB02 B:3-88                                                                 ------- Pfam domains (2)
         Sec.struct. author hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  3o9o B  0 SMAQIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIASQIS 95
                                     9        19        29        39        49        59        69        79        89
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3O9O)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: EsxAB (5)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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