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(-) Description

Title :  1.45 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF SHIKIMATE 5-DEHYDROGENASE (AROE) FROM VIBRIO CHOLERAE
 
Authors :  G. Minasov, S. H. Light, L. Shuvalova, L. Papazisi, W. F. Anderson, Cent Structural Genomics Of Infectious Diseases (Csgid)
Date :  03 Aug 10  (Deposition) - 18 Aug 10  (Release) - 18 Aug 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Alpha/Beta Domain, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Minasov, S. H. Light, L. Shuvalova, L. Papazisi, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
1. 45 Angstrom Resolution Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From Vibrio Cholerae.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SHIKIMATE 5-DEHYDROGENASE I ALPHA
    Chains: A
    EC Number: 1.1.1.25
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-DE3(MAGIC)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AROE, VCD_001524
    Organism Scientific: VIBRIO CHOLERAE BIOVAR EL TOR
    Organism Taxid: 243277
    Strain: N16961
 
Molecule 2 - SHIKIMATE 5-DEHYDROGENASE I ALPHA
    Chains: B
    EC Number: 1.1.1.25
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-DE3(MAGIC)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AROE, VCD_001524
    Mutation: YES
    Organism Scientific: VIBRIO CHOLERAE O1 BIOVAR EL TOR
    Organism Taxid: 243277
    Strain: N16961

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
1EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2NA2Ligand/IonSODIUM ION
3PCA1Mod. Amino AcidPYROGLUTAMIC ACID
4SO44Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:32 , HOH A:501 , HOH A:502 , HOH A:503 , HOH A:504 , HOH A:505BINDING SITE FOR RESIDUE NA A 279
2AC2SOFTWARETHR A:65 , VAL A:66 , LYS A:69 , HOH A:463BINDING SITE FOR RESIDUE SO4 A 280
3AC3SOFTWAREVAL A:66 , PRO A:67 , PHE A:68 , LYS A:69 , GLU A:70 , HOH A:493BINDING SITE FOR RESIDUE SO4 A 281
4AC4SOFTWAREGLY A:262 , THR A:263 , LYS A:264 , HOH A:288 , HOH A:488 , HOH A:506BINDING SITE FOR RESIDUE SO4 A 282
5AC5SOFTWARETHR A:80 , GLU A:81 , ARG A:82 , GLU A:108 , GLN A:145 , HOH A:393 , HOH A:416 , HOH A:454 , HOH A:473 , GLU B:172BINDING SITE FOR RESIDUE EPE A 283
6AC6SOFTWAREARG B:74 , ALA B:76 , HOH B:399 , HOH B:464 , HOH B:516BINDING SITE FOR RESIDUE NA B 2
7AC7SOFTWAREVAL B:66 , PRO B:67 , PHE B:68 , LYS B:69 , GLU B:70 , HOH B:352 , HOH B:507 , HOH B:517BINDING SITE FOR RESIDUE SO4 B 279

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:41 -B:41

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Val A:66 -Pro A:67
2Asn B:13 -Pro B:14
3Val B:66 -Pro B:67

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3O8Q)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3O8Q)

(-) Exons   (0, 0)

(no "Exon" information available for 3O8Q)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.......hhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhh...eeee...hhhhhhhhh.eehhhhhhhh...eeee.....eeee.hhhhhhhhhhhhh.......eeeee..hhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhh.eeeee.hhh...eeeeee.........hhh.eeeeeeeee.......hhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3o8q A   5 IDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILGDNTDGEGLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLPAIDPVIFSSRSVCYDMMYGKGYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRKNLEGAL 278
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194||     208       218       228       238       248       258       268       278
                                                                                                                                                                                                                        195|                                                                              
                                                                                                                                                                                                                         200                                                                              


Chain B from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee......hhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhh...eeee...hhhhhhhhh.eehhhhhhhh...eeee.....eeee.hhhhhhhhhhhhh.......eeeee..hhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhh.eeeee.hhh.....eeee.........hhhhh....eeee.......hhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o8q B   4 xIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILGDNTDGEGLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSGELPAIDPVIFSSRSVCYDMMYGKGYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRKNLEG 276
                            |       13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193|      207       217       227       237       247       257       267         
                            4-PCA                                                                                                                                                                                      193|                                                                              
                                                                                                                                                                                                                        198
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3O8Q)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3O8Q)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3O8Q)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3O8Q)

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  Cis Peptide Bonds
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