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(-) Description

Title :  THE SOLUBLE DOMAIN STRUCTURE OF THE ZNTB ZN2+ EFFLUX SYSTEM
 
Authors :  Q. Wan, C. Dealwis
Date :  09 Jul 10  (Deposition) - 23 Mar 11  (Release) - 17 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.13
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Alpha-Beta-Alpha, Zinc Efflux Transporter, Membrane, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Wan, B. Gorzelle, J. W. Fairman, M. Fuente, F. Homammed, C. Dealwis, M. Maguire
The Soluble Domain Structure Of The Zntb Zn2+ Efflux System
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ZINC TRANSPORT PROTEIN ZNTB
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: SOLUBLE DOMAIN (UNP RESIDUES 1-262)
    Gene: ZNTB, STM1656
    Organism Scientific: SALMONELLA ENTERICA
    Organism Taxid: 90371
    Strain: SUBSP. ENTERICA SEROVAR TYPHIMURIUM

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 15)

Asymmetric/Biological Unit (1, 15)
No.NameCountTypeFull Name
1ZN15Ligand/IonZINC ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:168 , CYS A:246 , ARG A:249BINDING SITE FOR RESIDUE ZN A 1
02AC2SOFTWAREHIS B:168 , CYS B:246BINDING SITE FOR RESIDUE ZN B 265
03AC3SOFTWAREHIS C:168 , GLU C:242 , CYS C:246BINDING SITE FOR RESIDUE ZN C 265
04AC4SOFTWAREHIS D:168 , CYS D:246 , ARG D:249BINDING SITE FOR RESIDUE ZN D 265
05AC5SOFTWAREHIS E:168 , GLU E:242 , CYS E:246BINDING SITE FOR RESIDUE ZN E 265
06AC6SOFTWARECYS A:94 , HIS A:159BINDING SITE FOR RESIDUE ZN A 265
07AC7SOFTWARECYS B:94 , HIS B:159BINDING SITE FOR RESIDUE ZN B 266
08AC8SOFTWARECYS C:94 , HIS C:159BINDING SITE FOR RESIDUE ZN C 266
09AC9SOFTWARECYS D:94 , HIS D:159BINDING SITE FOR RESIDUE ZN D 266
10BC1SOFTWARECYS E:94 , HIS E:159BINDING SITE FOR RESIDUE ZN E 266
11BC2SOFTWAREHIS A:41BINDING SITE FOR RESIDUE ZN A 266
12BC3SOFTWAREASP B:23 , HIS B:41 , HIS C:41 , ZN C:267BINDING SITE FOR RESIDUE ZN B 267
13BC4SOFTWAREHIS B:41 , ZN B:267 , HIS C:41BINDING SITE FOR RESIDUE ZN C 267
14BC5SOFTWAREHIS D:41 , HIS E:41 , ZN E:267BINDING SITE FOR RESIDUE ZN D 267
15BC6SOFTWAREHIS D:41 , ZN D:267 , ASP E:23 , HIS E:41BINDING SITE FOR RESIDUE ZN E 267

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NWI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3NWI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NWI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NWI)

(-) Exons   (0, 0)

(no "Exon" information available for 3NWI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:245
 aligned with ZNTB_SALTY | Q9EYX5 from UniProtKB/Swiss-Prot  Length:327

    Alignment length:259
                             1                                                                                                                                                                                                                                                                 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249         
           ZNTB_SALTY     - -MEAIKGSDVNVPDAVFAWLLDGRGGVKPLEDNDVIDSQHPCWLHLNYTHPDSARWLASTPLLPNNVRDALAGESSRPRVSRMGEGTLITLRCINGSTDERPDQLVAMRLYMDERFIVSTRQRKVLALDDVVSDLQEGTGPVDCGGWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDHRRRMQDIADRLGRGLDEIDACIARTGIMADEIAQV 258
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee..........eeeee.....eee.....ee.....eeeeee..hhhhhhhhhhh...hhhhhhhhh......eeeee..eeeeeee..----------..eeeeee...eeeeee...hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..----.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nwi A   2 HMEAIKGSDVNVPDAVFAWLLDGRGGVKPLEDNDVIDSQHPCWLHLNYTHPDSARWLASTPLLPNNVRDALAGESSRPRVSRMGEGTLITLRCI----------LVAMRLYMDERFIVSTRQRKVLALDDVVSDLQEGTGPVDCGGWLVDVCDALTDHASEFIEELHDKIIDLEDN----QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDHRRRMQDIADRLGRGLDEIDACIARTGIMADEIAQV 260
                                    11        21        31        41        51        61        71        81        91   |     -    |  111       121       131       141       151       161       171     |   -|      191       201       211       221       231       241       251         
                                                                                                                        95        106                                                                    177  182                                                                              


Chain B from PDB  Type:PROTEIN  Length:247
 aligned with ZNTB_SALTY | Q9EYX5 from UniProtKB/Swiss-Prot  Length:327

    Alignment length:261
                             1                                                                                                                                                                                                                                                                   
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259 
           ZNTB_SALTY     - -MEAIKGSDVNVPDAVFAWLLDGRGGVKPLEDNDVIDSQHPCWLHLNYTHPDSARWLASTPLLPNNVRDALAGESSRPRVSRMGEGTLITLRCINGSTDERPDQLVAMRLYMDERFIVSTRQRKVLALDDVVSDLQEGTGPVDCGGWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDHRRRMQDIADRLGRGLDEIDACIARTGIMADEIAQVMQ 260
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee..........eeeee.....eee.....ee.....eeeeee..hhhhhhhhhhh...hhhhhhhhh......eeeee..eeeeeee..----------..eeeeee...eeeeee...hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..----.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nwi B   2 HMEAIKGSDVNVPDAVFAWLLDGRGGVKPLEDNDVIDSQHPCWLHLNYTHPDSARWLASTPLLPNNVRDALAGESSRPRVSRMGEGTLITLRCI----------LVAMRLYMDERFIVSTRQRKVLALDDVVSDLQEGTGPVDCGGWLVDVCDALTDHASEFIEELHDKIIDLEDN----QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDHRRRMQDIADRLGRGLDEIDACIARTGIMADEIAQVMQ 262
                                    11        21        31        41        51        61        71        81        91   |     -    |  111       121       131       141       151       161       171     |   -|      191       201       211       221       231       241       251       261 
                                                                                                                        95        106                                                                    177  182                                                                                


Chain C from PDB  Type:PROTEIN  Length:249
 aligned with ZNTB_SALTY | Q9EYX5 from UniProtKB/Swiss-Prot  Length:327

    Alignment length:263
                             1                                                                                                                                                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259   
           ZNTB_SALTY     - -MEAIKGSDVNVPDAVFAWLLDGRGGVKPLEDNDVIDSQHPCWLHLNYTHPDSARWLASTPLLPNNVRDALAGESSRPRVSRMGEGTLITLRCINGSTDERPDQLVAMRLYMDERFIVSTRQRKVLALDDVVSDLQEGTGPVDCGGWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDHRRRMQDIADRLGRGLDEIDACIARTGIMADEIAQVMQES 262
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee..........eeeee.....eee.....ee.....eeeeee..hhhhhhhhhhh...hhhhhhhhh......eeeee..eeeeeee..----------..eeeeee...eeeeee...hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..----.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nwi C   2 HMEAIKGSDVNVPDAVFAWLLDGRGGVKPLEDNDVIDSQHPCWLHLNYTHPDSARWLASTPLLPNNVRDALAGESSRPRVSRMGEGTLITLRCI----------LVAMRLYMDERFIVSTRQRKVLALDDVVSDLQEGTGPVDCGGWLVDVCDALTDHASEFIEELHDKIIDLEDN----QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDHRRRMQDIADRLGRGLDEIDACIARTGIMADEIAQVMQES 264
                                    11        21        31        41        51        61        71        81        91   |     -    |  111       121       131       141       151       161       171     |   -|      191       201       211       221       231       241       251       261   
                                                                                                                        95        106                                                                    177  182                                                                                  


Chain D from PDB  Type:PROTEIN  Length:249
 aligned with ZNTB_SALTY | Q9EYX5 from UniProtKB/Swiss-Prot  Length:327

    Alignment length:263
                             1                                                                                                                                                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259   
           ZNTB_SALTY     - -MEAIKGSDVNVPDAVFAWLLDGRGGVKPLEDNDVIDSQHPCWLHLNYTHPDSARWLASTPLLPNNVRDALAGESSRPRVSRMGEGTLITLRCINGSTDERPDQLVAMRLYMDERFIVSTRQRKVLALDDVVSDLQEGTGPVDCGGWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDHRRRMQDIADRLGRGLDEIDACIARTGIMADEIAQVMQES 262
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee..........eeeee.....eee.....ee.....eeeeee..hhhhhhhhhhh...hhhhhhhhh......eeeee..eeeeeee..----------..eeeeee...eeeeee...hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..----.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nwi D   2 HMEAIKGSDVNVPDAVFAWLLDGRGGVKPLEDNDVIDSQHPCWLHLNYTHPDSARWLASTPLLPNNVRDALAGESSRPRVSRMGEGTLITLRCI----------LVAMRLYMDERFIVSTRQRKVLALDDVVSDLQEGTGPVDCGGWLVDVCDALTDHASEFIEELHDKIIDLEDN----QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDHRRRMQDIADRLGRGLDEIDACIARTGIMADEIAQVMQES 264
                                    11        21        31        41        51        61        71        81        91   |     -    |  111       121       131       141       151       161       171     |   -|      191       201       211       221       231       241       251       261   
                                                                                                                        95        106                                                                    177  182                                                                                  


Chain E from PDB  Type:PROTEIN  Length:248
 aligned with ZNTB_SALTY | Q9EYX5 from UniProtKB/Swiss-Prot  Length:327

    Alignment length:262
                             1                                                                                                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259  
           ZNTB_SALTY     - -MEAIKGSDVNVPDAVFAWLLDGRGGVKPLEDNDVIDSQHPCWLHLNYTHPDSARWLASTPLLPNNVRDALAGESSRPRVSRMGEGTLITLRCINGSTDERPDQLVAMRLYMDERFIVSTRQRKVLALDDVVSDLQEGTGPVDCGGWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDHRRRMQDIADRLGRGLDEIDACIARTGIMADEIAQVMQE 261
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------------------------------CorA-3nwiE01 E:39-263                                                                                                                                                                                                             Pfam domains (1)
           Pfam domains (2) -------------------------------------CorA-3nwiE02 E:39-263                                                                                                                                                                                                             Pfam domains (2)
           Pfam domains (3) -------------------------------------CorA-3nwiE03 E:39-263                                                                                                                                                                                                             Pfam domains (3)
           Pfam domains (4) -------------------------------------CorA-3nwiE04 E:39-263                                                                                                                                                                                                             Pfam domains (4)
           Pfam domains (5) -------------------------------------CorA-3nwiE05 E:39-263                                                                                                                                                                                                             Pfam domains (5)
         Sec.struct. author ....ee..........eeeee.....eee.....ee.....eeeeee..hhhhhhhhhhh...hhhhhhhhh......eeeee..eeeeeee..----------..eeeeee...eeeeee...hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..----.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nwi E   2 HMEAIKGSDVNVPDAVFAWLLDGRGGVKPLEDNDVIDSQHPCWLHLNYTHPDSARWLASTPLLPNNVRDALAGESSRPRVSRMGEGTLITLRCI----------LVAMRLYMDERFIVSTRQRKVLALDDVVSDLQEGTGPVDCGGWLVDVCDALTDHASEFIEELHDKIIDLEDN----QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDHRRRMQDIADRLGRGLDEIDACIARTGIMADEIAQVMQE 263
                                    11        21        31        41        51        61        71        81        91   |     -    |  111       121       131       141       151       161       171     |   -|      191       201       211       221       231       241       251       261  
                                                                                                                        95        106                                                                    177  182
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NWI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NWI)

(-) Pfam Domains  (1, 5)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: CorA] (2)
(-)
Family: CorA (2)
(-)
Salmonella typhimurium (2)
1aCorA-3nwiE01E:39-263
1bCorA-3nwiE02E:39-263
1cCorA-3nwiE03E:39-263
1dCorA-3nwiE04E:39-263
1eCorA-3nwiE05E:39-263

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E   (ZNTB_SALTY | Q9EYX5)
molecular function
    GO:0046873    metal ion transmembrane transporter activity    Enables the transfer of metal ions from one side of a membrane to the other.
    GO:0005385    zinc ion transmembrane transporter activity    Enables the transfer of zinc (Zn) ions from one side of a membrane to the other.
biological process
    GO:0098655    cation transmembrane transport    A process in which a cation is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0030001    metal ion transport    The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0055085    transmembrane transport    The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
    GO:0071577    zinc II ion transmembrane transport    A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006829    zinc II ion transport    The directed movement of zinc (Zn II) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  3nwi
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  ZNTB_SALTY | Q9EYX5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ZNTB_SALTY | Q9EYX5: 3nvo

(-) Related Entries Specified in the PDB File

3nvo