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(-) Description

Title :  CRYSTAL STRUCTURE OF BOVINE XANTHINE OXIDASE IN COMPLEX WITH GUANINE
 
Authors :  H. Cao, R. Hille
Date :  08 Jul 10  (Deposition) - 19 Jan 11  (Release) - 03 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B,C,J,K,L
Keywords :  Hydroxylase, Homodimer, Xanthine Oxidase, Guanine, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Cao, J. Hall, R. Hille
Substrate Orientation And Specificity In Xanthine Oxidase: Crystal Structures Of The Enzyme In Complex With Indole-3-Acetaldehyde And Guanine.
Biochemistry V. 53 533 2014
PubMed-ID: 24397336  |  Reference-DOI: 10.1021/BI401465U

(-) Compounds

Molecule 1 - XANTHINE DEHYDROGENASE/OXIDASE
    Chains: A, J
    EC Number: 1.17.1.4, 1.17.3.2
    Fragment: IRON-SULFUR BINDING DOMAIN
    Organism Common: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: MILK
    Synonym: XANTHINE DEHYDROGENASE, XD, XANTHINE OXIDASE, XO, XANTHINE OXIDOREDUCTASE
 
Molecule 2 - XANTHINE DEHYDROGENASE/OXIDASE
    Chains: B, K
    EC Number: 1.17.1.4, 1.17.3.2
    Fragment: FLAVIN BINDING DOMAIN
    Organism Common: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: MILK
    Synonym: XANTHINE DEHYDROGENASE, XD, XANTHINE OXIDASE, XO, XANTHINE OXIDOREDUCTASE
 
Molecule 3 - XANTHINE DEHYDROGENASE/OXIDASE
    Chains: C, L
    EC Number: 1.17.1.4, 1.17.3.2
    Fragment: MOLYBDENUM BINDING DOMAIN
    Organism Common: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: MILK
    Synonym: XANTHINE DEHYDROGENASE, XD, XANTHINE OXIDASE, XO, XANTHINE OXIDOREDUCTASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 12)

Asymmetric/Biological Unit (5, 12)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FES4Ligand/IonFE2/S2 (INORGANIC) CLUSTER
3GUN2Ligand/IonGUANINE
4MOS2Ligand/IonDIOXOTHIOMOLYBDENUM(VI) ION
5MTE2Ligand/IonPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:112 , CYS A:113 , GLY A:114 , CYS A:116 , CYS A:148 , ARG A:149 , CYS A:150BINDING SITE FOR RESIDUE FES A 601
02AC2SOFTWAREGLY A:42 , CYS A:43 , GLY A:44 , GLY A:46 , GLY A:47 , CYS A:48 , GLY A:49 , CYS A:51 , ASN A:71 , CYS A:73BINDING SITE FOR RESIDUE FES A 602
03AC3SOFTWAREGLY A:46 , LYS B:256 , LEU B:257 , VAL B:258 , VAL B:259 , GLY B:260 , ASN B:261 , THR B:262 , GLU B:263 , ILE B:264 , ALA B:301 , PHE B:337 , ALA B:346 , SER B:347 , GLY B:350 , ASN B:351 , ILE B:353 , THR B:354 , SER B:359 , ASP B:360 , ILE B:403 , LEU B:404 , HOH B:539 , HOH B:550 , HOH B:551 , HOH B:590 , HOH B:815 , HOH B:1334 , HOH B:2882BINDING SITE FOR RESIDUE FAD B 606
04AC4SOFTWAREGLN A:112 , CYS A:150 , HOH C:72 , HOH C:207 , HOH C:305 , GLY C:796 , GLY C:797 , PHE C:798 , GLY C:799 , ARG C:912 , MET C:1038 , GLY C:1039 , GLN C:1040 , ALA C:1078 , ALA C:1079 , SER C:1080 , VAL C:1081 , SER C:1082 , GLN C:1194 , MOS C:1328BINDING SITE FOR RESIDUE MTE C 1327
05AC5SOFTWAREGUN C:503 , GLN C:767 , GLY C:799 , GLU C:802 , PHE C:911 , ARG C:912 , ALA C:1078 , ALA C:1079 , GLU C:1261 , MTE C:1327BINDING SITE FOR RESIDUE MOS C 1328
06AC6SOFTWAREGLU C:802 , LEU C:873 , ARG C:880 , PHE C:914 , PHE C:1009 , THR C:1010 , VAL C:1011 , LEU C:1014 , ALA C:1078 , MOS C:1328 , HOH C:2256BINDING SITE FOR RESIDUE GUN C 503
07AC7SOFTWAREGLN J:112 , CYS J:113 , GLY J:114 , CYS J:116 , CYS J:148 , ARG J:149 , CYS J:150BINDING SITE FOR RESIDUE FES J 601
08AC8SOFTWAREGLY J:42 , CYS J:43 , GLY J:44 , GLY J:46 , GLY J:47 , CYS J:48 , GLY J:49 , CYS J:51 , ASN J:71 , CYS J:73BINDING SITE FOR RESIDUE FES J 602
09AC9SOFTWAREGLY J:46 , LYS K:256 , LEU K:257 , VAL K:258 , VAL K:259 , GLY K:260 , ASN K:261 , THR K:262 , GLU K:263 , ILE K:264 , ALA K:301 , PHE K:337 , ALA K:338 , ALA K:346 , SER K:347 , GLY K:350 , ASN K:351 , ILE K:353 , THR K:354 , SER K:359 , ASP K:360 , ILE K:403 , LEU K:404 , HOH K:531 , HOH K:700 , HOH K:738 , HOH K:834 , HOH K:1061 , HOH K:1230 , HOH K:1280 , HOH K:1767BINDING SITE FOR RESIDUE FAD K 606
10BC1SOFTWAREGLN J:112 , CYS J:150 , HOH L:223 , HOH L:304 , HOH L:372 , GLY L:796 , GLY L:797 , PHE L:798 , GLY L:799 , ARG L:912 , MET L:1038 , GLY L:1039 , GLN L:1040 , ALA L:1078 , ALA L:1079 , SER L:1080 , VAL L:1081 , SER L:1082 , GLN L:1194 , GLU L:1261 , MOS L:1328BINDING SITE FOR RESIDUE MTE L 1327
11BC2SOFTWAREGUN L:503 , GLN L:767 , GLY L:799 , PHE L:911 , ARG L:912 , ALA L:1078 , ALA L:1079 , GLU L:1261 , MTE L:1327BINDING SITE FOR RESIDUE MOS L 1328
12BC3SOFTWAREGLU L:802 , SER L:876 , ARG L:880 , PHE L:914 , PHE L:1009 , THR L:1010 , VAL L:1011 , LEU L:1014 , ALA L:1078 , ALA L:1079 , MOS L:1328 , HOH L:2165BINDING SITE FOR RESIDUE GUN L 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NVW)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser C:1298 -Pro C:1299
2Ser L:1298 -Pro L:1299

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NVW)

(-) PROSITE Motifs  (4, 8)

Asymmetric/Biological Unit (4, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
12FE2S_FER_2PS51085 2Fe-2S ferredoxin-type iron-sulfur binding domain profile.XDH_BOVIN4-91
 		  2A:4-91
J:4-91
22FE2S_FER_1PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature.XDH_BOVIN43-51
 		  2A:43-51
J:43-51
3FAD_PCMHPS51387 PCMH-type FAD-binding domain profile.XDH_BOVIN229-414
 		  2B:229-414
K:229-414
4MOLYBDOPTERIN_EUKPS00559 Eukaryotic molybdopterin oxidoreductases signature.XDH_BOVIN797-832
 		  2C:797-832
L:797-832

(-) Exons   (0, 0)

(no "Exon" information available for 3NVW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:164
 aligned with XDH_BOVIN | P80457 from UniProtKB/Swiss-Prot  Length:1332

    Alignment length:164
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161    
           XDH_BOVIN      2 TADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQGFRTFAK  165
               SCOP domains d3nvwa1 A:2-92 automated matches                                                           d3nvwa2 A:93-165 automated matches                                        SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..eeeee.......hhhhhhhhh..................eeeeeeee....eeeeeeee....hhhhh...eeehhhhh.......hhhhhhhhhh.......hhhhhhhhhhhhhhhh...hhhhhhh...........hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --2FE2S_FER_2  PDB: A:4-91 UniProt: 4-91                                                  -------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) -----------------------------------------2FE2S_FER------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3nvw A    2 TADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQGFRTFAK  165
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161    


Chain B from PDB  Type:PROTEIN  Length:334
 aligned with XDH_BOVIN | P80457 from UniProtKB/Swiss-Prot  Length:1332

    Alignment length:334
                                   204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524    
           XDH_BOVIN    195 LFNPEEFMPLDPTQEPIFPPELLRLKDVPPKQLRFEGERVTWIQASTLKELLDLKAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASPISDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYRKTLLGPEEILLSIEIPYSREDEFFSAFKQASRREDDIAKVTCGMRVLFQPGSMQVKELALCYGGMADRTISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSPDAPGGMIEFRRTLTLSFFFKFYLTVLKKLG  528
               SCOP domains d3nvwb1 B:195-414 automated matches                                                                                                                                                                                         d3nvwb2 B:415-528 automated matches                                                                                SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh...........hhhhhhh.......eeee....eeee..hhhhhhhhhhhh...ee.....hhhhhhhhh.....eeee...hhhhh.eee...eeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhh.....hhhhhhhh..eeeeee..eeeeee.hhhhh............eeeeeeee.....eeeeeee............eeeeeeee......eeeeeeeee......eehhhhhhh......hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------FAD_PCMH  PDB: B:229-414 UniProt: 229-414                                                                                                                                                 ------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3nvw B  195 LFNPEEFMPLDPTQEPIFPPELLRLKDVPPKQLRFEGERVTWIQASTLKELLDLKAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASPISDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYRKTLLGPEEILLSIEIPYSREDEFFSAFKQASRREDDIAKVTCGMRVLFQPGSMQVKELALCYGGMADRTISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSPDAPGGMIEFRRTLTLSFFFKFYLTVLKKLG  528
                                   204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524    


Chain C from PDB  Type:PROTEIN  Length:756
 aligned with XDH_BOVIN | P80457 from UniProtKB/Swiss-Prot  Length:1332

    Alignment length:756
                                   580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260      1270      1280      1290      1300      1310      1320      
           XDH_BOVIN    571 DTVGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIPGSNETGLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYEDLPAIITIEDAIKNNSFYGSELKIEKGDLKKGFSEADNVVSGELYIGGQDHFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKNPDGSWEDWVMAAYQDRVSLSTTGFYRTPNLGYSFETNSGNAFHYFTYGVACSEVEIDCLTGDHKNLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSPEGSLHTRGPSTYKIPAFGSIPTEFRVSLLRDCPNKKAIYASKAVGEPPLFLGASVFFAIKDAIRAARAQHTNNNTKELFRLDSPATPEKIRNACVDKFTTLCVTGAPGNCK 1326
               SCOP domains d3nvwc1 C:571-694 automated matches                                                                                         d3nvwc2 C:695-1326 automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhh....hhhhh......eeeeeee.....eeeeeee..hhhhh..eeeeehhhhh....ee.....ee.....ee.....eeeeeee.hhhhhhhhhhh.eeeeee.....hhhhhhhh..eeeeeeeeee.hhhhhhhhh.eeeeeeeee...........eeeeee......eeeee...hhhhhhhhhhhhhh.hhh.eeeee.............hhhhhhhhhhhhhhhh..eeee.hhhhhhhhh.....eeeeeeeee.....eeeeeeeeeee......hhhhhhhhhhhh.........eeeeeeee.............hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee...hhhh.eeeeeeee.....eeeee.......hhhhhhhhhhhhhhh.hhh.ee...ee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh....eeeeeee.................eeeeeeeeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh......................hhhhh..eeeeee........hhhhh......hhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhh......hhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MOLYBDOPTERIN_EUK  PDB: C:797-832   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3nvw C  571 DTVGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIPGSNETGLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYEDLPAIITIEDAIKNNSFYGSELKIEKGDLKKGFSEADNVVSGELYIGGQDHFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKNPDGSWEDWVMAAYQDRVSLSTTGFYRTPNLGYSFETNSGNAFHYFTYGVACSEVEIDCLTGDHKNLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSPEGSLHTRGPSTYKIPAFGSIPTEFRVSLLRDCPNKKAIYASKAVGEPPLFLGASVFFAIKDAIRAARAQHTNNNTKELFRLDSPATPEKIRNACVDKFTTLCVTGAPGNCK 1326
                                   580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260      1270      1280      1290      1300      1310      1320      


Chain J from PDB  Type:PROTEIN  Length:164
 aligned with XDH_BOVIN | P80457 from UniProtKB/Swiss-Prot  Length:1332

    Alignment length:164
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161    
           XDH_BOVIN      2 TADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQGFRTFAK  165
               SCOP domains d3nvwj1 J:2-92 automated matches                                                           d3nvwj2 J:93-165 automated matches                                        SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..eeeee.......hhhhhhhhh..................eeeeeeee....eeeeeeee....hhhhh...eeehhhhh.......hhhhhhhhhh.......hhhhhhhhhhhhhhhh...hhhhhhhhhh........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --2FE2S_FER_2  PDB: J:4-91 UniProt: 4-91                                                  -------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) -----------------------------------------2FE2S_FER------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3nvw J    2 TADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQGFRTFAK  165
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161    


Chain K from PDB  Type:PROTEIN  Length:305
 aligned with XDH_BOVIN | P80457 from UniProtKB/Swiss-Prot  Length:1332

    Alignment length:305
                                   233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523     
           XDH_BOVIN    224 PKQLRFEGERVTWIQASTLKELLDLKAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASPISDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYRKTLLGPEEILLSIEIPYSREDEFFSAFKQASRREDDIAKVTCGMRVLFQPGSMQVKELALCYGGMADRTISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSPDAPGGMIEFRRTLTLSFFFKFYLTVLKKLG  528
               SCOP domains d3nvwk1 K:224-414 automated matches                                                                                                                                                            d3nvwk2 K:415-528 automated matches                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee....eeee..hhhhhhhhhhhh...ee.....hhhhhhhhh.....eeee...hhhhh.eee...eeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhh.....hhhhhhhhh.eeeee....eeeee.hhhhh............eeeeeeee.....eeeeeee............eeeeeeee......eeeeeeeee......eehhhhhhh......hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----FAD_PCMH  PDB: K:229-414 UniProt: 229-414                                                                                                                                                 ------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3nvw K  224 PKQLRFEGERVTWIQASTLKELLDLKAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASPISDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYRKTLLGPEEILLSIEIPYSREDEFFSAFKQASRREDDIAKVTCGMRVLFQPGSMQVKELALCYGGMADRTISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSPDAPGGMIEFRRTLTLSFFFKFYLTVLKKLG  528
                                   233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523     


Chain L from PDB  Type:PROTEIN  Length:745
 aligned with XDH_BOVIN | P80457 from UniProtKB/Swiss-Prot  Length:1332

    Alignment length:745
                                   580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260      1270      1280      1290      1300      1310     
           XDH_BOVIN    571 DTVGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIPGSNETGLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYEDLPAIITIEDAIKNNSFYGSELKIEKGDLKKGFSEADNVVSGELYIGGQDHFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKNPDGSWEDWVMAAYQDRVSLSTTGFYRTPNLGYSFETNSGNAFHYFTYGVACSEVEIDCLTGDHKNLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSPEGSLHTRGPSTYKIPAFGSIPTEFRVSLLRDCPNKKAIYASKAVGEPPLFLGASVFFAIKDAIRAARAQHTNNNTKELFRLDSPATPEKIRNACVDKFTT 1315
               SCOP domains d3nvwl1 L:571-694 automated matches                                                                                         d3nvwl2 L:695-1315 automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhh....hhhhh......eeeeeee.....eeeeeee..hhhhh..eeeeehhhhh....ee.....ee.....ee.....eeeeeee.hhhhhhhhhhh.eeeeee.....hhhhhhhh..eeeeeeeeee.hhhhhhhhh.eeeeeeeee...........eeeeee......eeeee...hhhhhhhhhhhhhh.hhh.eeeee.............hhhhhhhhhhhhhhhh..eeee.hhhhhhhhh.....eeeeeeeee.....eeeeeeeeeeeee....hhhhhhhhhhhh.........eeeeeeeee............hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee...hhhh.eeeeeeee.....eeeee.......hhhhhhhhhhhhhhh.hhh.ee...ee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh....eeeeeee.................eeeeeeeeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh......................hhhhh..eeeeee........hhhhh......hhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MOLYBDOPTERIN_EUK  PDB: L:797-832   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3nvw L  571 DTVGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIPGSNETGLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYEDLPAIITIEDAIKNNSFYGSELKIEKGDLKKGFSEADNVVSGELYIGGQDHFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKNPDGSWEDWVMAAYQDRVSLSTTGFYRTPNLGYSFETNSGNAFHYFTYGVACSEVEIDCLTGDHKNLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSPEGSLHTRGPSTYKIPAFGSIPTEFRVSLLRDCPNKKAIYASKAVGEPPLFLGASVFFAIKDAIRAARAQHTNNNTKELFRLDSPATPEKIRNACVDKFTT 1315
                                   580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260      1270      1280      1290      1300      1310
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (6, 12)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NVW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3NVW)

(-) Gene Ontology  (20, 20)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,J,K,L   (XDH_BOVIN | P80457)
molecular function
    GO:0051537    2 iron, 2 sulfur cluster binding    Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0043546    molybdopterin cofactor binding    Interacting selectively and non-covalently with the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016614    oxidoreductase activity, acting on CH-OH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
    GO:0016903    oxidoreductase activity, acting on the aldehyde or oxo group of donors    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
    GO:0004854    xanthine dehydrogenase activity    Catalysis of the reaction: xanthine + NAD+ + H2O = urate + NADH + H+.
    GO:0004855    xanthine oxidase activity    Catalysis of the reaction: xanthine + H2O + O2 = urate + hydrogen peroxide.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0009115    xanthine catabolic process    The chemical reactions and pathways resulting in the breakdown of xanthine, 2,6-dihydroxypurine, a purine formed in the metabolic breakdown of guanine but not present in nucleic acids.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005777    peroxisome    A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        XDH_BOVIN | P80457: 1fiq 1fo4 1n5x 1v97 1vdv 3am9 3amz 3ax7 3ax9 3b9j 3bdj 3etr 3eub 3nrz 3ns1 3nvv 3nvy 3nvz 3sr6 3una 3unc 3uni

(-) Related Entries Specified in the PDB File

3b9j 3etr 3eub 3nrz 3ns1 3nvv 3nvy 3nvz