3NVS - JenaLib

Title :   1.02 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE FROM VIBRIO CHOLERAE IN COMPLEX WITH SHIKIMATE-3-PHOSPHATE (PARTIALLY PHOTOLYZED) AND GLYPHOSATE

Authors :   G. Minasov, S. H. Light, A. Halavaty, G. Shuvalova, L. Papazisi, W. F. An Center For Structural Genomics Of Infectious Diseases (Csgi

Date :   08 Jul 10 (Deposition) - 21 Jul 10 (Release) - 21 Jul 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.02

Chains :   Asym./Biol. Unit : A

Keywords :   Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Inside-Out Alpha-Beta Barrel, Epsp Synthase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Minasov, S. H. Light, A. Halavaty, G. Shuvalova, L. Papazisi, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
1. 02 Angstrom Resolution Crystal Structure Of 3-Phosphoshikimate 1-Carboxyvinyltransferase From Vibrio Cholerae In Complex With Shikimate-3-Phosphate (Partially Photolyzed) And Glyphosate
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 12)

Sites (12, 12)

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:22 , SER A:23 , ARG A:27 , THR A:97 , SER A:170 , SER A:171 , GLN A:172 , SER A:198 , TYR A:201 , ASP A:314 , ASN A:337 , LYS A:341 , GPJ A:429 , HOH A:503 , HOH A:725 , HOH A:826	BINDING SITE FOR RESIDUE S3P A 427
02	AC2	SOFTWARE	LYS A:22 , SER A:23 , ARG A:27 , THR A:97 , GLN A:172 , TYR A:201 , ASP A:314 , LYS A:341 , GPJ A:429 , PO4 A:438 , HOH A:503	BINDING SITE FOR RESIDUE SKM A 428
03	AC3	SOFTWARE	LYS A:22 , ASN A:94 , GLY A:96 , ARG A:124 , GLN A:172 , ASP A:314 , GLU A:342 , ARG A:345 , HIS A:386 , ARG A:387 , LYS A:412 , S3P A:427 , SKM A:428 , HOH A:604 , HOH A:826	BINDING SITE FOR RESIDUE GPJ A 429
04	AC4	SOFTWARE	GLU A:123 , GLN A:145 , HOH A:753 , HOH A:871 , HOH A:901 , HOH A:927 , HOH A:1041	BINDING SITE FOR RESIDUE MG A 430
05	AC5	SOFTWARE	HOH A:608 , HOH A:732 , HOH A:733 , HOH A:734 , HOH A:735 , HOH A:1102	BINDING SITE FOR RESIDUE MG A 431
06	AC6	SOFTWARE	HOH A:524 , HOH A:533 , HOH A:740 , HOH A:741 , HOH A:742 , HOH A:743 , HOH A:744 , HOH A:953	BINDING SITE FOR RESIDUE MG A 432
07	AC7	SOFTWARE	ASP A:293 , ARG A:354 , VAL A:360	BINDING SITE FOR RESIDUE CL A 433
08	AC8	SOFTWARE	ASN A:17 , LYS A:420 , GLN A:423	BINDING SITE FOR RESIDUE CL A 434
09	AC9	SOFTWARE	ALA A:378 , ALA A:379 , HOH A:579 , HOH A:971	BINDING SITE FOR RESIDUE CL A 435
10	BC1	SOFTWARE	ARG A:354 , GLU A:362 , HOH A:745 , HOH A:866	BINDING SITE FOR RESIDUE CL A 436
11	BC2	SOFTWARE	LYS A:268 , ASP A:279 , TRP A:290 , HOH A:738 , HOH A:751 , HOH A:861	BINDING SITE FOR RESIDUE EPE A 437
12	BC3	SOFTWARE	SER A:170 , SER A:171 , VAL A:197 , SER A:198 , ASN A:337 , LYS A:341 , SKM A:428 , HOH A:725 , HOH A:826	BINDING SITE FOR RESIDUE PO4 A 438

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:426
 aligned with AROA_VIBCH | Q9KRB0 from UniProtKB/Swiss-Prot  Length:426

    Alignment length:426
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420      
           AROA_VIBCH     1 MESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNALTKLGVNYRLSADKTTCEVEGLGQAFHTTQPLELFLGNAGTAMRPLAAALCLGQGDYVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQGTGLQAGTVTIDGSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHDYQEFVIPAGQSYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQIEWGDDYVIARRGELNAVDLDFNHIPDAAMTIATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGATVEEGEDFIVITPPTKLIHAAIDTYDDHRMAMCFSLVALSDTPVTINDPKCTSKTFPDYFDKFAQLSR 426
               SCOP domains d3nvsa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains -----EPSP_synthase-3nvsA01 A:6-421                                                                                                                                                                                                                                                                                                                                                                                                   ----- Pfam domains
         Sec.struct. author ..eeee....ee.eeee...hhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh..eeee......eeee...........eeee...hhhhhhhhhhhh.....eeeee.hhhhhhh.hhhhhhhhhhh..eeee........eeee......eeeee.....hhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh....eee...eeee..........eee...hhhhhhhhhhhhhhhh.eeeee.......hhhhhhhhhhhhhh.eeee...eeeee.......eee......hhhhhhhhhhhh...eeee.hhhhhhh..hhhhhhhhhhhhh..eeee...eeeee........ee....hhhhhhhhhhhhhh...eeee.hhhhhhh..hhhhhhhhhee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------EPSP_SYNTHASE_1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPSP_SYNTHASE_2    --------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3nvs A   1 MESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNALTKLGVNYRLSADKTTCEVEGLGQAFHTTQPLELFLGNAGTAMRPLAAALCLGQGDYVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQGTGLQAGTVTIDGSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHDYQEFVIPAGQSYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQIEWGDDYVIARRGELNAVDLDFNHIPDAAMTIATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGATVEEGEDFIVITPPTKLIHAAIDTYDDHRMAMCFSLVALSDTPVTINDPKCTSKTFPDYFDKFAQLSR 426
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (AROA_VIBCH | Q9KRB0)

molecular function
	GO:0003866	3-phosphoshikimate 1-carboxyvinyltransferase activity	Catalysis of the reaction: 3-phosphoshikimate + phosphoenolpyruvate = 5-O-(1-carboxyvinyl)-3-phosphoshikimate + phosphate.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor).
biological process
	GO:0009073	aromatic amino acid family biosynthetic process	The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
	GO:0008652	cellular amino acid biosynthetic process	The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
	GO:0009423	chorismate biosynthetic process	The chemical reactions and pathways resulting in the formation of the unsymmetrical ether derived from phosphoenolpyruvate and 5-phosphoshikimic acid formed as an intermediate in the biosynthesis of aromatic amino acids and many other compounds.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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