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(-) Description

Title :  MMHFGN SEGMENT 138-143 FROM SYRIAN HAMSTER PRION
 
Authors :  M. I. Apostol, M. R. Sawaya, D. Eisenberg
Date :  08 Jul 10  (Deposition) - 02 Mar 11  (Release) - 13 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (6x)
Keywords :  Amyloid-Like Protofibril, Protein Fibril (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. I. Apostol, J. J. Wiltzius, M. R. Sawaya, D. Cascio, D. Eisenberg
Atomic Structures Suggest Determinants Of Transmission Barriers In Mammalian Prion Disease.
Biochemistry V. 50 2456 2011
PubMed-ID: 21323366  |  Reference-DOI: 10.1021/BI101803K

(-) Compounds

Molecule 1 - MAJOR PRION PROTEIN
    ChainsA, B
    EngineeredYES
    Organism CommonGOLDEN HAMSTER
    Organism ScientificMESOCRICETUS AURATUS
    Organism Taxid10036
    Other DetailsMMHFGN (UNP RESIDUES 138-143) FROM SYRIAN HAMSTER PRION
    SynonymPRP, PRP27-30, PRP33-35C
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (6x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3NVE)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:6
 aligned with PRIO_MESAU | P04273 from UniProtKB/Swiss-Prot  Length:254

    Alignment length:6
           PRIO_MESAU   138 MMHFGN 143
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author .eee.. Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 3nve A   1 MMHFGN   6

Chain B from PDB  Type:PROTEIN  Length:6
 aligned with PRIO_MESAU | P04273 from UniProtKB/Swiss-Prot  Length:254

    Alignment length:6
           PRIO_MESAU   138 MMHFGN 143
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
           Pfam domains (1) Prion- Pfam domains (1)
           Pfam domains (2) Prion- Pfam domains (2)
         Sec.struct. author .eee.. Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 3nve B   1 MMHFGN   6

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NVE)

(-) Pfam Domains  (1, 2)

Asymmetric Unit

(-) Gene Ontology  (13, 13)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (PRIO_MESAU | P04273)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0007050    cell cycle arrest    A regulatory process that halts progression through the cell cycle during one of the normal phases (G1, S, G2, M).
    GO:0051260    protein homooligomerization    The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0031225    anchored component of membrane    The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0045121    membrane raft    Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PRIO_MESAU | P042731b10 2kkg 2lh8 4yxl

(-) Related Entries Specified in the PDB File

3nvf IIHFGS HEXAPEPTIDE (RESIDUES 138-143) FROM HUMAN PRION PROTEIN
3nvg MIHFGN HEXAPEPTIDE (RESIDUES 137-142) FROM MOUSE PRION PROTEIN
3nvh MIHFGND (RESIDUES 137-143) FROM MOUSE PRION PROTEIN