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(-) Description

Title :  CRYSTAL STRUCTURE OF AN APAG PROTEIN (PA1934) FROM PSEUDOMONAS AERUGINOSA PAO1 AT 1.50 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  30 Jun 10  (Deposition) - 28 Jul 10  (Release) - 16 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of An Apag Protein (Pa1934) From Pseudomonas Aeruginosa At 1. 50 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - APAG PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PA1934
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1CAC1Ligand/IonCACODYLATE ION
2MRD3Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
3MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 12)
No.NameCountTypeFull Name
1CAC2Ligand/IonCACODYLATE ION
2MRD6Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
3MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:30 , ARG A:32 , LYS A:52 , GLU A:101BINDING SITE FOR RESIDUE MRD A 128
2AC2SOFTWARELYS B:52 , GLU B:101BINDING SITE FOR RESIDUE MRD B 127
3AC3SOFTWARETHR B:84 , VAL B:85 , ASP B:86BINDING SITE FOR RESIDUE MRD B 129
4AC4SOFTWAREARG A:120 , SER A:122 , ARG A:124 , HOH A:311 , GLN B:73 , SER B:79 , ARG B:120 , SER B:122 , HOH B:310BINDING SITE FOR RESIDUE CAC B 130

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:69 -A:125
2B:69 -B:125

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3NRF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:102
 aligned with Q9I2H0_PSEAE | Q9I2H0 from UniProtKB/TrEMBL  Length:126

    Alignment length:102
                                    34        44        54        64        74        84        94       104       114       124  
         Q9I2H0_PSEAE    25 DAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKPGASVEGDAIFASEDDAVYGASLVRLSDRCK 126
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeeeeeee..eeeeeeeeeeeee......ee....eeeeee....eeeeeee.hhhhh.ee....eeeeeeeeee..hhhh.eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3nrf A  25 DAVmVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKPGASVEGDAIFASEDDAVYGASLVRLSDRCK 126
                               |    34        44        54        64        74        84        94       104       114       124  
                               |                                                                                                  
                              28-MSE                                                                                              


Chain B from PDB  Type:PROTEIN  Length:103
 aligned with Q9I2H0_PSEAE | Q9I2H0 from UniProtKB/TrEMBL  Length:126

    Alignment length:103
                                    32        42        52        62        72        82        92       102       112       122   
         Q9I2H0_PSEAE    23 APDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKPGASVEGDAIFASEDDAVYGASLVRLSDRC 125
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeeeeee..eeeeeeeeeeeeee.....ee....eeeee.....eeeeeee.hhhhh.ee....eeeeeeeeee..hhhhhh.eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 3nrf B  23 APDAVmVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKPGASVEGDAIFASEDDAVYGASLVRLSDRC 125
                                 |  32        42        52        62        72        82        92       102       112       122   
                                28-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NRF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NRF)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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