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(-) Description

Title :  OPTIMIZATION OF THE IN SILICO DESIGNED KEMP ELIMINASE KE70 BY COMPUTATIONAL DESIGN AND DIRECTED EVOLUTION R4 8/5A
 
Authors :  O. Khersonsky, D. Rothlisberge, A. M. Wollacott, O. Dym, D. Baker, D. S. Israel Structural Proteomics Center (Ispc)
Date :  29 Jun 10  (Deposition) - 09 Feb 11  (Release) - 19 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Tim, Structural Genomics, Israel Structural Proteomics Center, Ispc, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Khersonsky, D. Rothlisberger, A. M. Wollacott, P. Murphy, O. Dym, S. Albeck, G. Kiss, K. N. Houk, D. Baker, D. S. Tawfik
Optimization Of The In-Silico-Designed Kemp Eliminase Ke70 By Computational Design And Directed Evolution
J. Mol. Biol. V. 407 391 2011
PubMed-ID: 21277311  |  Reference-DOI: 10.1016/J.JMB.2011.01.041

(-) Compounds

Molecule 1 - DEOXYRIBOSE PHOSPHATE ALDOLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1BEN1Ligand/IonBENZAMIDINE
2NO32Ligand/IonNITRATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:112 , ARG A:207 , ALA A:237 , SER A:238 , GLY A:239 , SER A:240 , LEU A:241BINDING SITE FOR RESIDUE NO3 A 268
2AC2SOFTWAREHIS A:15 , PHE A:47 , SER A:169 , THR A:170 , VAL A:203 , HOH A:306BINDING SITE FOR RESIDUE BEN A 301
3AC3SOFTWAREASP A:220 , GLU A:221 , LEU A:222 , PHE A:223 , GLY A:224BINDING SITE FOR RESIDUE NO3 A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NQ8)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:76 -Pro A:77

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NQ8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NQ8)

(-) Exons   (0, 0)

(no "Exon" information available for 3NQ8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhheeee......hhhhhhhhhhhhee..ee..eee.hhhhhhhhhhhhhhh.....eeeeee.......hhhhhhhhhhhhhhhh..eeeee.hhhhhhh..hhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhhhh...eee..........hhhhhhhhhhhhhhh......eee......hhhhhhhhhhhhhhhhh..........eeehhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3nq8 A   3 LKASSLRALKLMHLATSANDDTDENVIALCHQAKTPVGTTDAIFIYPRFIPIARKTLKEQGTPEIRICTSTNFPHGNDDIDIALAETRAAIAYGADGVAVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLSVIIETGELKDEALIRKASEISIKAGADYIVTSTGKVAVGATPESARIMMEVIRDMGVENTVGFIPVGGVRTAEDAQKYLAIADELFGADWADARHYAFGASGSLLASLLKAL 249
                                    12        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243      
                                             21|                                                                                                                                                                                                                                  
                                              23
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NQ8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NQ8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3NQ8)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3NQ8)

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    Phe A:76 - Pro A:77   [ RasMol ]  
 

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  3nq8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

3npu 3npv 3npw 3npx 3nq2 3nqv 3nr0