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(-) Description

Title :  CRYSTAL STRUCTURE OF A PFAM DUF1093 FAMILY PROTEIN (BSU39620) FROM BACILLUS SUBTILIS AT 2.15 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  28 Jun 10  (Deposition) - 28 Jul 10  (Release) - 28 Jul 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (3x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Pfam Duf1093 Family Protein (Bsu39620) From Bacillus Subtilis At 2. 15 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PFAM DUF1093 FAMILY PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YXEA, BSU39620, HS74A
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Synonym: UNCHARACTERIZED PROTEIN YXEA

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 18)

Asymmetric Unit (3, 18)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2MSE2Mod. Amino AcidSELENOMETHIONINE
3SO49Ligand/IonSULFATE ION
Biological Unit 1 (3, 18)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2MSE2Mod. Amino AcidSELENOMETHIONINE
3SO49Ligand/IonSULFATE ION
Biological Unit 2 (3, 54)
No.NameCountTypeFull Name
1GOL21Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE
3SO427Ligand/IonSULFATE ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:33 , ILE A:35 , PHE A:74 , PHE A:75 , VAL A:95 , GLU A:96 , THR A:97 , TRP A:98 , HOH A:264 , PRO B:33BINDING SITE FOR RESIDUE GOL A 203
02AC2SOFTWARELYS A:68 , HOH A:236 , HOH A:265 , GLY B:0BINDING SITE FOR RESIDUE GOL A 204
03AC3SOFTWARELYS A:102 , GLU A:104 , SER A:109 , HOH A:223 , ASP B:108 , LYS B:115BINDING SITE FOR RESIDUE GOL A 205
04AC4SOFTWARELYS A:78 , ARG A:81 , HOH A:237BINDING SITE FOR RESIDUE GOL A 206
05AC5SOFTWAREGLN A:43 , TYR A:85 , HOH A:262 , GOL B:202BINDING SITE FOR RESIDUE GOL A 207
06AC6SOFTWAREGLY A:0 , HOH A:315 , HOH B:308BINDING SITE FOR RESIDUE SO4 A 208
07AC7SOFTWAREHIS A:50 , SER A:52 , PRO A:53 , GLY A:54 , HOH A:322BINDING SITE FOR RESIDUE SO4 A 209
08AC8SOFTWAREGLN A:37 , LYS A:89 , SO4 A:211 , HOH A:235BINDING SITE FOR RESIDUE SO4 A 210
09AC9SOFTWARELYS A:89 , LYS A:91 , SO4 A:210 , HOH A:231BINDING SITE FOR RESIDUE SO4 A 211
10BC1SOFTWAREARG A:49 , GLU A:57 , HOH A:257 , LEU B:51 , SER B:52BINDING SITE FOR RESIDUE SO4 A 213
11BC2SOFTWAREPRO A:33 , GLN B:37 , PHE B:75 , LYS B:91 , GLU B:96 , TRP B:98 , HOH B:324BINDING SITE FOR RESIDUE GOL B 201
12BC3SOFTWARETYR A:85 , GOL A:207 , TYR B:85BINDING SITE FOR RESIDUE GOL B 202
13BC4SOFTWAREPHE A:34 , HIS A:36 , HOH A:219 , HOH A:232 , LYS B:93 , TYR B:94 , HOH B:238 , HOH B:254BINDING SITE FOR RESIDUE SO4 B 212
14BC5SOFTWAREGLU A:71 , HOH A:301 , ARG B:30 , HIS B:50 , SER B:52 , PRO B:53 , GLY B:54BINDING SITE FOR RESIDUE SO4 B 214
15BC6SOFTWAREGLY B:0 , ARG B:30BINDING SITE FOR RESIDUE SO4 B 215
16BC7SOFTWAREARG A:49 , HIS A:50 , SER A:52 , HOH A:299 , ARG B:49BINDING SITE FOR RESIDUE SO4 B 216

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NPP)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ser A:52 -Pro A:53
2Ser B:52 -Pro B:53

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NPP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NPP)

(-) Exons   (0, 0)

(no "Exon" information available for 3NPP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:87
 aligned with YXEA_BACSU | P54940 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:87
                                    38        48        58        68        78        88        98       108       
           YXEA_BACSU    29 DRFNPFIHQQDVYVQIDRDGRHLSPGGTEYTLDGYNASGKKEEVTFFAGKELRKNAYLKVKAKGKYVETWEEVKFEDMPDSVQSKLK 115
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.....eeeeeee.....eee...eeeeeeeee.....eeeeeeee........eeeeeee..eeeeeeeehhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 3npp A   0 GRFNPFIHQQDVYVQIDRDGRHLSPGGTEYTLDGYNASGKKEEVTFFAGKELRKNAYLKVKAKGKYVETWEEVKFEDmPDSVQSKLK 115
                            ||      38        48        58        68        78        88        98       108       
                            ||                                                                         106-MSE     
                            0|                                                                                     
                            30                                                                                     


Chain B from PDB  Type:PROTEIN  Length:87
 aligned with YXEA_BACSU | P54940 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:87
                                    38        48        58        68        78        88        98       108       
           YXEA_BACSU    29 DRFNPFIHQQDVYVQIDRDGRHLSPGGTEYTLDGYNASGKKEEVTFFAGKELRKNAYLKVKAKGKYVETWEEVKFEDMPDSVQSKLK 115
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.....eeeeeee.....eee...eeeeeeeeee....eeeeeeee........eeeeeee..eeeeeeeehhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 3npp B   0 GRFNPFIHQQDVYVQIDRDGRHLSPGGTEYTLDGYNASGKKEEVTFFAGKELRKNAYLKVKAKGKYVETWEEVKFEDmPDSVQSKLK 115
                            ||      38        48        58        68        78        88        98       108       
                            0|                                                                         106-MSE     
                            30
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NPP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NPP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3NPP)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3NPP)

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