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(-) Description

Title :  THE CRYSTAL STRUCTURE OF GERANYLTRANSTRANSFERASE FROM CAMPYLOBACTER JEJUNI
 
Authors :  Z. Zhang, S. K. Burley, S. Swaminathan, New York Sgx Research Cente Structural Genomics (Nysgxrc)
Date :  28 Jun 10  (Deposition) - 14 Jul 10  (Release) - 14 Jul 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transferase, Isoprene Biosynthesis, Sgx, Structural Genomics, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Zhang, S. K. Burley, S. Swaminathan
The Crystal Structure Of Geranyltranstransferase From Campylobacter Jejuni
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GERANYLTRANSTRANSFERASE
    Chains: A, B
    EC Number: 2.5.1.10
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BC-PSGX3(BC)
    Expression System Strain: BL21(DE3) CODON+RIL STRATAGENE
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CJE1816, ISPA
    Organism Scientific: CAMPYLOBACTER JEJUNI
    Organism Taxid: 195099
    Strain: RM1221

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 13)

Asymmetric/Biological Unit (3, 13)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE10Mod. Amino AcidSELENOMETHIONINE
3PPV2Ligand/IonPYROPHOSPHATE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:37 , LYS A:38 , ARG A:41 , HIS A:71 , ARG A:90 , TYR A:280 , HOH A:317 , HOH A:371 , HOH A:380 , HOH A:459 , HOH A:485 , HOH A:526BINDING SITE FOR RESIDUE PPV A 290
2AC2SOFTWARELEU A:31 , TYR A:99 , ASN A:191 , ASN A:192 , GLU A:193 , HOH A:333 , HOH A:493BINDING SITE FOR RESIDUE GOL A 291
3AC3SOFTWAREGLY B:37 , LYS B:38 , ARG B:41 , HIS B:71 , ARG B:90 , HOH B:345 , HOH B:387 , HOH B:480BINDING SITE FOR RESIDUE PPV B 290

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NPK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3NPK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NPK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NPK)

(-) Exons   (0, 0)

(no "Exon" information available for 3NPK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                         
               SCOP domains d3npka_ A: automated matches                                                                                                                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh..........hhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh........ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3npk A   1 LNLKELFIHHLEKNLPKVESFHPFFNEALALmLKAGGKHFRAQLLLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAmDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGmVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKmGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTNSFVNLLGLEQAIKTKENLLNECEQDLEKLNEKLAQmIQNLIIQYL 281
                                    10        20        30 |      40        50        60        70        80  |     90       100       110       120       130       140    |  150       160       170       180  |    190       200       210       236       246       256       266     | 276     
                                                          32-MSE                                             83-MSE                                                       145-MSE                               183-MSE                             219|                                 272-MSE     
                                                                                                                                                                                                                                                     236                                             


Chain B from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains d3npkb_ B: automated matches                                                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.........hhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh........ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3npk B   0 SLNLKELFIHHLEKNLPKVESFHPFFNEALALmLKAGGKHFRAQLLLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAmDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGmVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKmGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDNSFVNLLGLEQAIKTKENLLNECEQDLEKLNEKLAQmIQNLII 278
                                     9        19        29  |     39        49        59        69        79   |    89        99       109       119       129       139     | 149       159       169       179   |   189       199       209       237       247       257       267    |  277 
                                                           32-MSE                                             83-MSE                                                       145-MSE                               183-MSE                           217|                                 272-MSE  
                                                                                                                                                                                                                                                    236
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NPK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3NPK)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3NPK)

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